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TEST:
Oncomine™ Pan-Cancer Cell-Free Assay

Type:
Laboratory Developed Test
Related tests:
9ms
Prognostic value of assessing ctDNA in patients with endometrial carcinoma - an international multicenter study. (PubMed, Gynecol Oncol)
Our results demonstrated the feasibility of using an off-the-shelf gene panel to detect ctDNA in patients with endometrial cancer. ctDNA positivity was significantly associated with worse oncological outcomes.
Clinical • Journal • Circulating tumor DNA
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Oncomine™ Pan-Cancer Cell-Free Assay
9ms
Mutational Analysis of Bile Cell-Free DNA in Primary Sclerosing Cholangitis: A Pilot Study. (PubMed, Liver Int)
Mutational analysis of cfDNA obtained from bile collected from PSC patients undergoing ERCP is feasible. Implementing the Bilemut assay may help identify patients needing closer surveillance and further imaging studies.
Journal
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KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • GNAS (GNAS Complex Locus)
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TP53 mutation • KRAS mutation
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Oncomine™ Pan-Cancer Cell-Free Assay
9ms
Liquid biopsy for monitoring minimal residual disease in localized and locally-advanced non-small cell lung cancer after radical-intent treatment. (PubMed, J Liq Biopsy)
There is no evidence of ctDNA or radiological disease relapse in the other three patients. Finally, a review of the literature addressing the potential value of MRD detection in this clinical setting is presented and discussed as well.
Review • Journal • Liquid biopsy • Minimal residual disease
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EGFR (Epidermal growth factor receptor)
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EGFR mutation
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cobas® EGFR Mutation Test v2 • Oncomine™ Pan-Cancer Cell-Free Assay
1year
Liquid Biopsy in Next Generation Sequencing (NGS) for tumor molecular profiling in advanced NSCLC in Umbria population: a realworld experience (AIOM 2024)
Blood-based LB performed by NGS is a non-invasive viable alternative tool for molecular genotyping and identifiy tumor-derived somatic alterations to increase the number of pts elegible to target therapy and guide personalized medicine.
Clinical • Real-world evidence • Liquid biopsy • Next-generation sequencing • Real-world • Metastases • Biopsy
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • MET (MET proto-oncogene, receptor tyrosine kinase) • RET (Ret Proto-Oncogene)
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TP53 mutation • BRAF V600E • KRAS mutation • EGFR mutation • KRAS G12C • BRAF V600 • RET fusion • MET exon 14 mutation • KRAS G12 • KRAS exon 4 mutation
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Oncomine™ Pan-Cancer Cell-Free Assay
1year
Negative hyperselection and mechanisms of acquired resistance to first-line chemotherapy plus anti-EGFR in pMMR RAS/BRAF wild-type (wt) metastatic colorectal cancer (mCRC) patients (pts): a translational analysis of the TRIPLETE trial (AIOM 2024)
TRIPLETE is a phase III trial where 435 pts with RAS/BRAF wt – per local assessment – mCRC were randomized to receive first-line FOLFOX/ panitumumab (pan) or mFOLFOXIRI/pan... In contrast to previous data, negative hyperselection both through tissue and plasma analysis failed to demonstrate a prognostic role among pMMR RAS/BRAF wt mCRC pts treated with first-line chemotherapy plus pan. The confounding effect of the associated chemotherapy is a potential explanation for this finding. Tissue and plasma analyses at baseline failed to provide fully concordant results.
Clinical • Preclinical • Metastases
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BRAF (B-raf proto-oncogene) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
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BRAF V600E • MSI-H/dMMR • BRAF V600 • BRAF wild-type • RAS mutation • RAS wild-type
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FoundationOne® CDx • Oncomine™ Pan-Cancer Cell-Free Assay • Oncomine Focus Assay
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5-fluorouracil • Vectibix (panitumumab) • leucovorin calcium
1year
Clinical Validation of an Amplicon-Based Next-Generation Sequencing (NGS) Liquid Biopsy Assay for Predictive Testing in Patients with Solid Tumours (AMP 2024)
The assay shows good performance in detecting hotspot SNVs and small indels in ctDNA, and is suitable for clinical use. The limitation of bioinformatics pipelines in variant calling should be noted, and consideration can be given to run multiple pipelines in parallel to avoid missing out variants.
Clinical • Liquid biopsy • Next-generation sequencing • Biopsy
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • NRAS (Neuroblastoma RAS viral oncogene homolog) • IDH1 (Isocitrate dehydrogenase (NADP(+)) 1)
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EGFR exon 20 insertion • EGFR exon 20 mutation
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Oncomine™ Pan-Cancer Cell-Free Assay
1year
Molecular Residual Disease Precedes Radiographic Confirmation of Recurrence in Patients with Stage III Inflammatory Breast Cancer (SABCS 2024)
Among stage III IBC patients with relapse, MRD was detected with a median lead time of approximately 6 months prior to radiographic confirmation of disease recurrence. Incorporation of serial assessments of MRD may offer the opportunity for early systemic treatment intervention in IBC patients with high risk of relapse.
Clinical
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Oncomine™ Pan-Cancer Cell-Free Assay • CELLSEARCH®
1year
Implementing Massive Parallel Sequencing into Biliary Samples Obtained through Endoscopic Retrograde Cholangiopancreatography for Diagnosing Malignant Bile Duct Strictures. (PubMed, Int J Mol Sci)
MPS-based molecular testing shows promise in identifying actionable genomic alterations, potentially enabling the stratification of patients for targeted chemotherapeutic treatments. Future research should focus on integrating OCA and OPCCFA testing, as well as similar MPS-based assays, into existing surveillance and management protocols for patients with bile duct strictures.
Journal
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BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • SMAD4 (SMAD family member 4) • CTNNB1 (Catenin (cadherin-associated protein), beta 1) • RAS (Rat Sarcoma Virus)
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TP53 mutation • BRAF mutation • SMAD4 mutation
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Oncomine™ Pan-Cancer Cell-Free Assay
over1year
ctDNA-NGS Assay (Liquid Biopsy) for Non-Small Cell Lung Cancer: Utility of Plasma Cell-Free DNA and Tissue NGS in Detecting Genetic Mutations (IASLC-WCLC 2024)
By being complementary or when tissue is not available, liquid biopsy has great potential in lung cancer management, ultimately improving patient outcomes and treatment efficacy. Type of detected mutations Mutations Targetable n(%) Non-targetable n(%) EGFR 8 (47.1) KRAS 6 (35.2) 4 (26.6) BRAF 1 (5.9) 1 (6.7) ERBB2 1 (5.9) MET ex 14 1 (5.9) FGFR4 1 (6.7) GNAS 2 (13.3) RET 1 (6.7) MAP2K1 1 (6.7) TP53 5 (33.3)
Liquid biopsy • Next-generation sequencing • Circulating tumor DNA • Biopsy • Cell-free DNA
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • MAP2K1 (Mitogen-activated protein kinase kinase 1) • FGFR4 (Fibroblast growth factor receptor 4) • GNAS (GNAS Complex Locus)
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TP53 mutation • KRAS mutation • EGFR mutation • KRAS G12C • KRAS G12
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Oncomine™ Pan-Cancer Cell-Free Assay
over1year
Early detection of disease progression in NSCLC patients undergoing immunotherapy through ctDNA analysis (ESMO 2024)
The integration of baseline and early on-treatment ctDNA analysis enables the identification of patients that do not benefit from IO-based treatments as early as three weeks after the initiation of the therapy, anticipating disease progression and being useful to tailor patient management.
Clinical • IO biomarker • Circulating tumor DNA
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Oncomine™ Pan-Cancer Cell-Free Assay
over1year
Is presence of molecular residual disease after pathologic complete response associated with relapse in inflammatory breast cancer? (ESMO 2024)
A high proportion of IBC patients had persistent MRD despite achieving pCR. Longitudinal assessment of the molecular landscape is necessary for optimal risk stratification in patients with IBC.
Clinical
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Oncomine™ Pan-Cancer Cell-Free Assay • CELLSEARCH®
over1year
Negative hyperselection and mechanisms of acquired resistance to first-line chemotherapy plus anti-EGFR in pMMR RAS/BRAF wild-type (wt) metastatic colorectal cancer (mCRC) patients (pts): A translational analysis of the TRIPLETE trial (ESMO-GI 2024)
TRIPLETE is a phase III trial where 435 pts with RAS/BRAF wt mCRC were randomized to receive first-line FOLFOX/panitumumab (pan) or mFOLFOXIRI/pan. Pts enrolled in the TRIPLETE trial with available tissue and plasma at baseline (BP), and plasma at the time of disease progression (PDP) were included... In contrast to previous data, negative hyperselection both through tissue and plasma analysis failed to demonstrate a prognostic role among pMMR RAS/BRAF wt mCRC pts treated with first-line chemotherapy plus pan. The confounding effect of the associated chemotherapy is a potential explanation for this finding.
Preclinical • Clinical • Metastases
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BRAF (B-raf proto-oncogene) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
|
FoundationOne® CDx • Oncomine™ Pan-Cancer Cell-Free Assay • Oncomine Focus Assay
|
5-fluorouracil • Vectibix (panitumumab) • leucovorin calcium