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TEST:
Oncomine™ Lung cfDNA Assay

Type:
Laboratory Developed Test
Related tests:
Evidence

News

5ms
Cell free DNA in patients with pancreatic adenocarcinoma: clinicopathologic correlations. (PubMed, Sci Rep)
Detectable ctDNA mutations were more frequent in patients with poorly differentiated tumors, and patients without detectable ctDNA mutations showed longer survival (medians of 10.5 months vs. 18 months, p = 0.019). The detection of circulating tumor DNA in pancreatic adenocarcinomas is correlated with worse survival outcomes.
Journal
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KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53)
|
Oncomine™ Lung cfDNA Assay
over1year
Evaluation of the Analytical Performance of Oncomine Lung cfDNA Assay for Detection of Plasma EGFR Mutations. (PubMed, Genes (Basel))
The Oncomine Lung cfDNA Assay can be used to identify plasma EGFR mutations in patients with lung cancer, although further large-scale studies are required to evaluate the analytical validity for other types of aberrations and genes using clinical samples.
Journal
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EGFR (Epidermal growth factor receptor) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha)
|
TP53 mutation • EGFR mutation • PIK3CA mutation
|
cobas® EGFR Mutation Test v2 • Oncomine™ Lung cfDNA Assay
over1year
Surveillance of cfDNA Hot Spot Mutations in NSCLC Patients during Disease Progression. (PubMed, Int J Mol Sci)
In addition, TP53 mutation status significantly predicts shorter overall survival (HR = 3.4 &lsqb;1.2-9.7]; p < 0.001). We demonstrated that TP53 mutation incidence as well as a cell-free DNA load can be used as biomarkers for NSCLC monitoring and can help to detect the disease progression prior to radiological confirmation of the status.
Journal
|
KRAS (KRAS proto-oncogene GTPase) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha)
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TP53 mutation • KRAS mutation • PIK3CA mutation
|
Oncomine™ Lung cfDNA Assay
almost2years
Concordance of Actionable Mutations in Liquid Biopsies and Matched Tumor Tissue of Brazilian Non-small Cell Lung Cancer (NSCLC) (LALCA 2023)
The NGS panel could successfully detect actionable mutations in liquid biopsies with a high concordance rate and sensitivity. The detection of variants in cfDNA, but not in tDNA, suggests a greater representativeness of the mutational tumor spectrum in samples of liquid biopsies opening perspectives for employing this approach in the routing setting. The NGS assay for liquid biopsy may decrease tissue biopsies and turnaround time for report release, accelerating therapeutic strategies for NSCLC patients.
Liquid biopsy • Biopsy • Discordant
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EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
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KRAS G12C • EGFR T790M • KRAS G12D • KRAS G12V • KRAS G13D • KRAS G12 • PIK3CA E542K • KRAS G13 • TP53 R175H • KRAS Q61H • ALK R1275Q • BRAF G469A • EGFR E709K • MAP2K1 P124Q • PIK3CA E542 • TP53 R248Q • TP53 Y220C • EGFR E746 • MAP2K1 E203K • MAP2K1 P124 • TP53 R273C
|
Oncomine™ Lung cfDNA Assay
2years
Evaluation of Cell-Free DNA Testing with Guardant360 Cdx for Identifying Clinically Actionable Mutations in Lung Cancer Patients at Weill Cornell Medicine (AMP 2022)
Nearly one-third of NSCLC patients were found to have actionable mutations by liquid biopsy, and these were highly concordant with tissue. Oncomine cfDNA testing is predicted to provide similar results with lower cost and faster turnaround time.
Clinical
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EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • MET (MET proto-oncogene, receptor tyrosine kinase) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS)
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BRAF V600E • KRAS mutation • EGFR mutation • KRAS G12C • BRAF V600 • EGFR exon 19 deletion • EGFR T790M • MET exon 14 mutation • ALK fusion • ROS1 fusion • KRAS G12 • ALK-ROS1 fusion
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Guardant360® CDx • Oncomine™ Lung cfDNA Assay
over2years
Front-line liquid biopsy for early molecular assessment and treatment of hospitalized lung cancer patients (ESMO 2022)
Conclusions Front-line liquid biopsy might improve the management of symptomatic, hospitalized patients with lung cancer, potentially leading to early start of targeted therapy. Enrollment and longitudinal monitoring of oncogenic drivers with liquid biopsy are ongoing.
Clinical • Liquid biopsy
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • ALK (Anaplastic lymphoma kinase)
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KRAS mutation • EGFR mutation • EGFR exon 19 deletion • ALK rearrangement
|
Oncomine Lung Cell-Free Total Nucleic Acid Research Assay • Oncomine™ Lung cfDNA Assay
over2years
Adding Alectinib Rescues Progression on Osimertinib Due to Acquired ALK p.R1275Q Variant in EGFR p.L858R-mutated NSCLC (IASLC-WCLC 2022)
The patient was unfit for platin-based doublet chemotherapy but was offered Pemetrexed, continuing Osimertinib in standard doses...This variant is characteristic for neuroblastomas and known to be Crizotinib-resistant... Liquid biopsy-guided approach at progression in elderly patients with reduced PS may offer a feasible and effective therapy, as in this case by combining ALK- and EGFR-TKI. The treatment is ongoing and current progression-free survival is now 8 months, which is the longest under the whole treatment course. Effective combination of Osimertinib and Alectinib has been reported in single cases of disseminated EGFR-mutant NSCLC becoming resistant to Osimertinib through acquired ALK-fusions.
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53)
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TP53 mutation • KRAS mutation • EGFR mutation • EGFR L858R • ALK fusion • ALK mutation • KRAS G12R • KRAS G12 • ALK R1275Q
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Oncomine™ Comprehensive Assay v3M • Archer® FusionPlex® Lung Kit • Oncomine™ Lung cfDNA Assay
|
Xalkori (crizotinib) • Tagrisso (osimertinib) • Alecensa (alectinib) • pemetrexed
over3years
Phase II Trial of Trametinib and Panitumumab in RAS/RAF Wild Type Metastatic Colorectal Cancer. (PubMed, Clin Colorectal Cancer)
The addition of trametinib to panitumumab led to a high rate of tumor shrinkage in RAS/RAF wt metastatic colorectal cancer, with poor tolerability due to a high incidence of skin toxicity. Median PFS was similar to panitumumab alone in historical control data.
Journal • P2 data
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KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • NRAS (Neuroblastoma RAS viral oncogene homolog)
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BRAF mutation • BRAF wild-type • RAS wild-type
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Oncomine™ Lung cfDNA Assay
|
Avastin (bevacizumab) • Mekinist (trametinib) • 5-fluorouracil • Vectibix (panitumumab) • oxaliplatin • irinotecan
over3years
[VIRTUAL] Impact of Real - World DNA - and RNA - Based Rebiopsy Testing in EGFR - Mutated NSCLC Progressing on Osimertinib. (IASLC-WCLC 2021)
"The patient received stereotactic radiosurgery (SRS) against two intracranial processes followed by Erlotinib and achieved intra- and extracranial partial response (PR)...Based on these results no additional targeted treatment options were possible, and chemotherapy with Carboplatin/Pemetrexed was initiated while continuing Osimertinib, achieving only short-term stabilization of the disease. However, additional NGS analysis of RNA isolated from the hepatic metastasis showed ANK3-RET fusion on chromosome 10q (breakpoint chr10: 61994446, chr10: 43612032), and RET-TKI was initiated (Pralsetinib)...2. Complementary RNA-based testing is important to implement as a standard diagnostic strategy to better uncover the molecular evolution in advanced EGFR-mutated NSCLC and contribute to identification of further targeted treatment possibilities when progression during Osimertinib occur."
EGFR (Epidermal growth factor receptor) • RET (Ret Proto-Oncogene) • PTEN (Phosphatase and tensin homolog) • MDM2 (E3 ubiquitin protein ligase)
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EGFR mutation • EGFR exon 19 deletion • EGFR T790M • RET fusion • PTEN mutation • MDM2 amplification • EGFR E746
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Oncomine™ Comprehensive Assay v3M • Archer® FusionPlex® Lung Kit • Oncomine™ Lung cfDNA Assay
|
Tagrisso (osimertinib) • erlotinib • carboplatin • pemetrexed • Gavreto (pralsetinib)
over3years
[VIRTUAL] Lung Cancer Diagnosis in Absence of Adequate Tissue Molecular Analysis in Metastatic Disease by NGS Analysis of Plasma cfDNA (IASLC-WCLC 2021)
17 TP53 p.R249S 18 TP53 p.R158H 19 TP53 p.S215R 20 TP53 p.P278L 21 TP53 p.R283H 22 TP53 p.P278S; TP53 p.G279E; TP53 c.375+3_375+4insG; p.? 23 TP53 p.R267Q 24 TP53 p.C238F; TP53 p.C275S 25 TP53 p.Y163C 26 TP53 p.R248W 27 TP53 p.S241F 28 TP53 p.V272G Conclusion For patients in whom molecular analysis on tissue cannot be performed, NGS analysis of cfDNA in plasma provides an opportunity to detect driver mutations for subsequent targeted therapy.
Next-generation sequencing
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EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha)
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TP53 mutation • KRAS G12C • BRAF mutation • PIK3CA mutation • EGFR exon 19 deletion • KRAS G12D • EGFR exon 20 insertion • KRAS G12V • PIK3CA E545K • KRAS G12 • KRAS Q61H • BRAF G466V • PIK3CA E545 • EGFR E746 • KRAS V12
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CELLSEARCH® • Oncomine™ Lung cfDNA Assay
over3years
[VIRTUAL] Minimal residual disease (MRD) in patients with resected stage I NSCLC: Results of the prospective adjuvant IFCT-0703 trial. (ASCO 2021)
P2/3 | "The IFCT-0703 randomized phase II trial failed to show a benefit of 6 months adjuvant pazopanib (P) vs... Post-operative ctDNA mutations are found in 26.0% of the pts but their positivity had no impact on DFS or OS . In contrast, DFS and OS were poorer in pts with increased plasma DNA concentration . ctDNA mutations status do not recapitulate the complexity of MRD characterization ."
Clinical • Minimal residual disease
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EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
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TP53 mutation • KRAS mutation • BRAF mutation • NRAS mutation • ALK mutation
|
Oncomine™ Lung cfDNA Assay
|
pazopanib
4years
[VIRTUAL] EGFR-L858R NSCLC with Pleiotropic Resistance Mechanisms: T790M, C797S, SCLC-Transformation and KRAS, TP53, and BRAF Mutations. (IASLC-WCLC 2020)
Carboplatin/Etoposide was initiated while continuing Osimertinib...Osimertinib was continued and chemotherapy modified to Carboplatin/Pemetrexed...Osimertinib was continued together with Gefitinib...In our patient, persistent EGFR-L858R mutation in the cfDNA 6 months after Erlotinib-start and 11 months after Osimertinib-start correlated with aggressive disease course. 3. The TKI-resistance mechanisms observed in the terminal phase (KRAS- and BRAF-mutations) represent targets for emerging combination-treatment options that are appearing in the repertoire of targeted therapies for NSCLC and may lead extended control of this complex disease in the future.
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53)
|
TP53 mutation • BRAF V600E • KRAS mutation • EGFR mutation • BRAF mutation • BRAF V600 • EGFR L858R • EGFR exon 19 deletion • EGFR T790M • KRAS G12V • EGFR C797S • KRAS G12 • TP53 Y220C
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Oncomine™ Lung cfDNA Assay
|
Tagrisso (osimertinib) • erlotinib • carboplatin • gefitinib • pemetrexed • etoposide IV
4years
[VIRTUAL] A Pan-Canadian Validation Study for the Detection of EGFR-T790M Mutations Using Circulating Tumour DNA (ctDNA) from Blood (IASLC-WCLC 2020)
Conclusion These results indicate that the NGS and ddPCR platforms yielded the most concordant results for EGFR T790M detection in ctDNA when compared to a clinically validated reference lab. Discrepancies between sending labs using the same assay suggest that lab-specific factors may impact performance.
EGFR (Epidermal growth factor receptor) • KIT (KIT proto-oncogene, receptor tyrosine kinase)
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EGFR mutation • EGFR L858R • EGFR exon 19 deletion • EGFR T790M
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cobas® EGFR Mutation Test v2 • Oncomine™ Lung cfDNA Assay
4years
[VIRTUAL] Pulmonary adenocarcinoma EGFR exon 20 insertion determined in liquid biopsy – case report (ECP 2020)
Exon 20 insertion mutation is associated with lack of sensitivity to first-generation EGFR TKIs (erlotinib/gefitinib) and a partial response to second-generation (afatinib) and third-generation (osimertinib/rociletinib); promising results for nazartinib and poziotinib are on line. Conclusion Studies showed that different exon 20 insertions lead to different response to EGFR TKIs depending on the location in the kinase domain that they affect. Therefore, it is important to report the mutation and make the follow up.
Clinical • Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • ER (Estrogen receptor) • NKX2-1 (NK2 Homeobox 1) • VIM (Vimentin)
|
EGFR mutation • ATM mutation • EGFR exon 20 insertion • EGFR exon 20 mutation
|
Idylla™ EGFR Mutation Test • Oncomine™ Lung cfDNA Assay
|
Tagrisso (osimertinib) • erlotinib • Gilotrif (afatinib) • gefitinib • Pozenveo (poziotinib) • Xegafri (rociletinib) • nazartinib (EGF816)
4years
[VIRTUAL] EGFR L858R and PIK3CA H1047R mutations in pulmonary adenocarcinoma – diagnosis in liquid biopsy (ECP 2020)
The EGFR c.2573T>G;p.(Leu858Arg) mutation and PIK3CA c.3140A>G;p.(His1047Arg) mutation are associated with response to EGFR TKIs and response with PI3K/AKT/mTOR pathway inhibitors, respectively. Conclusion Interactions between PIK3CA/EGFR mutations are not yet clearly interpreted in pulmonary carcinomas and clinical outcome unknown, deserving more data for treatment definition.
Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • NKX2-1 (NK2 Homeobox 1) • VIM (Vimentin)
|
EGFR mutation • PIK3CA mutation • EGFR L858R • PIK3CA H1047R • EGFR mutation + PIK3CA mutation
|
Idylla™ EGFR Mutation Test • Oncomine™ Lung cfDNA Assay
4years
[VIRTUAL] KRAS/NRAS mutations deserves report in non – surgical pulmonary adenocarcinomas early molecular characterisation (ECP 2020)
KRAS became a predictive biomarker of response to either target/chemotherapy and early preclinical data showed that the presence of KRAS mutation induced greater sensitivity in pemetrexed models. Conclusion The role of KRAS/NRAS deserves early inclusion in liquid biopsy of non-surgical adenocarcinomas to follow up therapy in advanced pulmonary carcinomas once immunotherapy seems to benefit from these molecular alterations.
IO biomarker
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog)
|
TP53 mutation • KRAS mutation • NRAS mutation
|
Oncomine™ Lung cfDNA Assay
|
pemetrexed
4years
[VIRTUAL] KRAS/NRAS mutations deserves report in non – surgical pulmonary adenocarcinomas early molecular characterisation (ECP 2020)
KRAS became a predictive biomarker of response to either target/chemotherapy and early preclinical data showed that the presence of KRAS mutation induced greater sensitivity in pemetrexed models. Conclusion The role of KRAS/NRAS deserves early inclusion in liquid biopsy of non-surgical adenocarcinomas to follow up therapy in advanced pulmonary carcinomas once immunotherapy seems to benefit from these molecular alterations.
IO biomarker
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog)
|
TP53 mutation • KRAS mutation • NRAS mutation
|
Oncomine™ Lung cfDNA Assay
|
pemetrexed
4years
[VIRTUAL] Pulmonary adenocarcinoma EGFR exon 20 insertion determined in liquid biopsy – case report (ECP 2020)
Exon 20 insertion mutation is associated with lack of sensitivity to first-generation EGFR TKIs (erlotinib/gefitinib) and a partial response to second-generation (afatinib) and third-generation (osimertinib/rociletinib); promising results for nazartinib and poziotinib are on line. Conclusion Studies showed that different exon 20 insertions lead to different response to EGFR TKIs depending on the location in the kinase domain that they affect. Therefore, it is important to report the mutation and make the follow up.
Clinical • Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • ER (Estrogen receptor) • NKX2-1 (NK2 Homeobox 1) • VIM (Vimentin)
|
EGFR mutation • ATM mutation • EGFR exon 20 insertion • EGFR exon 20 mutation
|
Idylla™ EGFR Mutation Test • Oncomine™ Lung cfDNA Assay
|
Tagrisso (osimertinib) • erlotinib • Gilotrif (afatinib) • gefitinib • Pozenveo (poziotinib) • Xegafri (rociletinib) • nazartinib (EGF816)
4years
[VIRTUAL] EGFR L858R and PIK3CA H1047R mutations in pulmonary adenocarcinoma – diagnosis in liquid biopsy (ECP 2020)
The EGFR c.2573T>G;p.(Leu858Arg) mutation and PIK3CA c.3140A>G;p.(His1047Arg) mutation are associated with response to EGFR TKIs and response with PI3K/AKT/mTOR pathway inhibitors, respectively. Conclusion Interactions between PIK3CA/EGFR mutations are not yet clearly interpreted in pulmonary carcinomas and clinical outcome unknown, deserving more data for treatment definition.
Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • NKX2-1 (NK2 Homeobox 1) • VIM (Vimentin)
|
EGFR mutation • PIK3CA mutation • EGFR L858R • PIK3CA H1047R • EGFR mutation + PIK3CA mutation
|
Idylla™ EGFR Mutation Test • Oncomine™ Lung cfDNA Assay
4years
[VIRTUAL] EGFR L858R and PIK3CA H1047R mutations in pulmonary adenocarcinoma – diagnosis in liquid biopsy (ECP 2020)
The EGFR c.2573T>G;p.(Leu858Arg) mutation and PIK3CA c.3140A>G;p.(His1047Arg) mutation are associated with response to EGFR TKIs and response with PI3K/AKT/mTOR pathway inhibitors, respectively. Conclusion Interactions between PIK3CA/EGFR mutations are not yet clearly interpreted in pulmonary carcinomas and clinical outcome unknown, deserving more data for treatment definition.
Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • NKX2-1 (NK2 Homeobox 1) • VIM (Vimentin)
|
EGFR mutation • PIK3CA mutation • EGFR L858R • PIK3CA H1047R • EGFR mutation + PIK3CA mutation
|
Idylla™ EGFR Mutation Test • Oncomine™ Lung cfDNA Assay
4years
[VIRTUAL] KRAS/NRAS mutations deserves report in non – surgical pulmonary adenocarcinomas early molecular characterisation (ECP 2020)
KRAS became a predictive biomarker of response to either target/chemotherapy and early preclinical data showed that the presence of KRAS mutation induced greater sensitivity in pemetrexed models. Conclusion The role of KRAS/NRAS deserves early inclusion in liquid biopsy of non-surgical adenocarcinomas to follow up therapy in advanced pulmonary carcinomas once immunotherapy seems to benefit from these molecular alterations.
IO biomarker
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog)
|
TP53 mutation • KRAS mutation • NRAS mutation
|
Oncomine™ Lung cfDNA Assay
|
pemetrexed
4years
[VIRTUAL] Pulmonary adenocarcinoma EGFR exon 20 insertion determined in liquid biopsy – case report (ECP 2020)
Exon 20 insertion mutation is associated with lack of sensitivity to first-generation EGFR TKIs (erlotinib/gefitinib) and a partial response to second-generation (afatinib) and third-generation (osimertinib/rociletinib); promising results for nazartinib and poziotinib are on line. Conclusion Studies showed that different exon 20 insertions lead to different response to EGFR TKIs depending on the location in the kinase domain that they affect. Therefore, it is important to report the mutation and make the follow up.
Clinical • Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • ER (Estrogen receptor) • NKX2-1 (NK2 Homeobox 1) • VIM (Vimentin)
|
EGFR mutation • ATM mutation • EGFR exon 20 insertion • EGFR exon 20 mutation
|
Idylla™ EGFR Mutation Test • Oncomine™ Lung cfDNA Assay
|
Tagrisso (osimertinib) • erlotinib • Gilotrif (afatinib) • gefitinib • Pozenveo (poziotinib) • Xegafri (rociletinib) • nazartinib (EGF816)