^
Contact us  to learn more about
our Premium Content:  News alerts, weekly reports and conference planners

TEST:
Oncomine™ Lung cfDNA Assay

Type:
Laboratory Developed Test
Related tests:
Evidence

News

2ms
Feasibility of a ctDNA multigenic panel for non-small-cell lung cancer early detection and disease surveillance. (PubMed, Mol Oncol)
No variants were observed in NRAS, ROS1, and MET genes. Our data showed that this commercial NGS panel could detect actionable mutations, enabling early detection, treatment monitoring, and disease surveillance.
Journal • Circulating tumor DNA
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
|
TP53 mutation • EGFR mutation • BRAF mutation • PIK3CA mutation • EGFR T790M • ALK mutation
|
Oncomine™ Lung cfDNA Assay
over1year
Cell free DNA in patients with pancreatic adenocarcinoma: clinicopathologic correlations. (PubMed, Sci Rep)
Detectable ctDNA mutations were more frequent in patients with poorly differentiated tumors, and patients without detectable ctDNA mutations showed longer survival (medians of 10.5 months vs. 18 months, p = 0.019). The detection of circulating tumor DNA in pancreatic adenocarcinomas is correlated with worse survival outcomes.
Journal
|
KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53)
|
Oncomine™ Lung cfDNA Assay
over2years
Evaluation of the Analytical Performance of Oncomine Lung cfDNA Assay for Detection of Plasma EGFR Mutations. (PubMed, Genes (Basel))
The Oncomine Lung cfDNA Assay can be used to identify plasma EGFR mutations in patients with lung cancer, although further large-scale studies are required to evaluate the analytical validity for other types of aberrations and genes using clinical samples.
Journal
|
EGFR (Epidermal growth factor receptor) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha)
|
TP53 mutation • EGFR mutation • PIK3CA mutation
|
cobas® EGFR Mutation Test v2 • Oncomine™ Lung cfDNA Assay
over2years
Surveillance of cfDNA Hot Spot Mutations in NSCLC Patients during Disease Progression. (PubMed, Int J Mol Sci)
In addition, TP53 mutation status significantly predicts shorter overall survival (HR = 3.4 &lsqb;1.2-9.7]; p < 0.001). We demonstrated that TP53 mutation incidence as well as a cell-free DNA load can be used as biomarkers for NSCLC monitoring and can help to detect the disease progression prior to radiological confirmation of the status.
Journal
|
KRAS (KRAS proto-oncogene GTPase) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha)
|
TP53 mutation • KRAS mutation • PIK3CA mutation
|
Oncomine™ Lung cfDNA Assay
almost3years
Concordance of Actionable Mutations in Liquid Biopsies and Matched Tumor Tissue of Brazilian Non-small Cell Lung Cancer (NSCLC) (LALCA 2023)
The NGS panel could successfully detect actionable mutations in liquid biopsies with a high concordance rate and sensitivity. The detection of variants in cfDNA, but not in tDNA, suggests a greater representativeness of the mutational tumor spectrum in samples of liquid biopsies opening perspectives for employing this approach in the routing setting. The NGS assay for liquid biopsy may decrease tissue biopsies and turnaround time for report release, accelerating therapeutic strategies for NSCLC patients.
Liquid biopsy • Biopsy • Discordant
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
|
KRAS G12C • EGFR T790M • KRAS G12D • KRAS G12V • KRAS G13D • KRAS G12 • PIK3CA E542K • KRAS G13 • TP53 R175H • KRAS Q61H • ALK R1275Q • BRAF G469A • EGFR E709K • MAP2K1 P124Q • PIK3CA E542 • TP53 R248Q • TP53 Y220C • EGFR E746 • MAP2K1 E203K • MAP2K1 P124 • TP53 R273C
|
Oncomine™ Lung cfDNA Assay
3years
Evaluation of Cell-Free DNA Testing with Guardant360 Cdx for Identifying Clinically Actionable Mutations in Lung Cancer Patients at Weill Cornell Medicine (AMP 2022)
Nearly one-third of NSCLC patients were found to have actionable mutations by liquid biopsy, and these were highly concordant with tissue. Oncomine cfDNA testing is predicted to provide similar results with lower cost and faster turnaround time.
Clinical
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • MET (MET proto-oncogene, receptor tyrosine kinase) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS)
|
BRAF V600E • KRAS mutation • EGFR mutation • KRAS G12C • BRAF V600 • EGFR exon 19 deletion • EGFR T790M • MET exon 14 mutation • ALK fusion • ROS1 fusion • KRAS G12 • ALK-ROS1 fusion
|
Guardant360® CDx • Oncomine™ Lung cfDNA Assay
over3years
Front-line liquid biopsy for early molecular assessment and treatment of hospitalized lung cancer patients (ESMO 2022)
Conclusions Front-line liquid biopsy might improve the management of symptomatic, hospitalized patients with lung cancer, potentially leading to early start of targeted therapy. Enrollment and longitudinal monitoring of oncogenic drivers with liquid biopsy are ongoing.
Clinical • Liquid biopsy
|
EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • ALK (Anaplastic lymphoma kinase)
|
KRAS mutation • EGFR mutation • EGFR exon 19 deletion • ALK rearrangement
|
Oncomine Lung Cell-Free Total Nucleic Acid Research Assay • Oncomine™ Lung cfDNA Assay
over3years
Adding Alectinib Rescues Progression on Osimertinib Due to Acquired ALK p.R1275Q Variant in EGFR p.L858R-mutated NSCLC (IASLC-WCLC 2022)
The patient was unfit for platin-based doublet chemotherapy but was offered Pemetrexed, continuing Osimertinib in standard doses...This variant is characteristic for neuroblastomas and known to be Crizotinib-resistant... Liquid biopsy-guided approach at progression in elderly patients with reduced PS may offer a feasible and effective therapy, as in this case by combining ALK- and EGFR-TKI. The treatment is ongoing and current progression-free survival is now 8 months, which is the longest under the whole treatment course. Effective combination of Osimertinib and Alectinib has been reported in single cases of disseminated EGFR-mutant NSCLC becoming resistant to Osimertinib through acquired ALK-fusions.
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53)
|
TP53 mutation • KRAS mutation • EGFR mutation • EGFR L858R • ALK fusion • ALK mutation • KRAS G12R • KRAS G12 • ALK R1275Q
|
Oncomine™ Comprehensive Assay v3M • Archer® FusionPlex® Lung Kit • Oncomine™ Lung cfDNA Assay
|
Xalkori (crizotinib) • Tagrisso (osimertinib) • Alecensa (alectinib) • pemetrexed
over4years
Phase II Trial of Trametinib and Panitumumab in RAS/RAF Wild Type Metastatic Colorectal Cancer. (PubMed, Clin Colorectal Cancer)
The addition of trametinib to panitumumab led to a high rate of tumor shrinkage in RAS/RAF wt metastatic colorectal cancer, with poor tolerability due to a high incidence of skin toxicity. Median PFS was similar to panitumumab alone in historical control data.
Journal • P2 data
|
KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • NRAS (Neuroblastoma RAS viral oncogene homolog)
|
BRAF mutation • BRAF wild-type • RAS wild-type
|
Oncomine™ Lung cfDNA Assay
|
Avastin (bevacizumab) • Mekinist (trametinib) • 5-fluorouracil • Vectibix (panitumumab) • oxaliplatin • irinotecan
over4years
[VIRTUAL] Impact of Real - World DNA - and RNA - Based Rebiopsy Testing in EGFR - Mutated NSCLC Progressing on Osimertinib. (IASLC-WCLC 2021)
"The patient received stereotactic radiosurgery (SRS) against two intracranial processes followed by Erlotinib and achieved intra- and extracranial partial response (PR)...Based on these results no additional targeted treatment options were possible, and chemotherapy with Carboplatin/Pemetrexed was initiated while continuing Osimertinib, achieving only short-term stabilization of the disease. However, additional NGS analysis of RNA isolated from the hepatic metastasis showed ANK3-RET fusion on chromosome 10q (breakpoint chr10: 61994446, chr10: 43612032), and RET-TKI was initiated (Pralsetinib)...2. Complementary RNA-based testing is important to implement as a standard diagnostic strategy to better uncover the molecular evolution in advanced EGFR-mutated NSCLC and contribute to identification of further targeted treatment possibilities when progression during Osimertinib occur."
EGFR (Epidermal growth factor receptor) • RET (Ret Proto-Oncogene) • PTEN (Phosphatase and tensin homolog) • MDM2 (E3 ubiquitin protein ligase)
|
EGFR mutation • EGFR exon 19 deletion • EGFR T790M • RET fusion • PTEN mutation • MDM2 amplification • EGFR E746
|
Oncomine™ Comprehensive Assay v3M • Archer® FusionPlex® Lung Kit • Oncomine™ Lung cfDNA Assay
|
Tagrisso (osimertinib) • erlotinib • carboplatin • pemetrexed • Gavreto (pralsetinib)
over4years
[VIRTUAL] Lung Cancer Diagnosis in Absence of Adequate Tissue Molecular Analysis in Metastatic Disease by NGS Analysis of Plasma cfDNA (IASLC-WCLC 2021)
17 TP53 p.R249S 18 TP53 p.R158H 19 TP53 p.S215R 20 TP53 p.P278L 21 TP53 p.R283H 22 TP53 p.P278S; TP53 p.G279E; TP53 c.375+3_375+4insG; p.? 23 TP53 p.R267Q 24 TP53 p.C238F; TP53 p.C275S 25 TP53 p.Y163C 26 TP53 p.R248W 27 TP53 p.S241F 28 TP53 p.V272G Conclusion For patients in whom molecular analysis on tissue cannot be performed, NGS analysis of cfDNA in plasma provides an opportunity to detect driver mutations for subsequent targeted therapy.
Next-generation sequencing
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha)
|
TP53 mutation • KRAS G12C • BRAF mutation • PIK3CA mutation • EGFR exon 19 deletion • KRAS G12D • EGFR exon 20 insertion • KRAS G12V • PIK3CA E545K • KRAS G12 • KRAS Q61H • BRAF G466V • PIK3CA E545 • EGFR E746 • KRAS V12
|
CELLSEARCH® • Oncomine™ Lung cfDNA Assay
over4years
[VIRTUAL] Minimal residual disease (MRD) in patients with resected stage I NSCLC: Results of the prospective adjuvant IFCT-0703 trial. (ASCO 2021)
P2/3 | "The IFCT-0703 randomized phase II trial failed to show a benefit of 6 months adjuvant pazopanib (P) vs... Post-operative ctDNA mutations are found in 26.0% of the pts but their positivity had no impact on DFS or OS . In contrast, DFS and OS were poorer in pts with increased plasma DNA concentration . ctDNA mutations status do not recapitulate the complexity of MRD characterization ."
Clinical • Minimal residual disease
|
EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
|
TP53 mutation • KRAS mutation • BRAF mutation • NRAS mutation • ALK mutation
|
Oncomine™ Lung cfDNA Assay
|
pazopanib