Comparing Transcriptomic Responses to Chemicals Across Six Species using the EcoToxChip RNASeq database. (PubMed, Environ Toxicol Chem)
The EcoToxChip project includes RNA-sequencing data from experiments involving model (Japanese quail, fathead minnow, African clawed frog) and ecological (double-crested cormorant, rainbow trout, northern leopard frog) species, at multiple life stages (whole embryo and adult), exposed to eight chemicals of environmental concern known to perturb a wide range of biological systems (ethinyl estradiol, hexabromocyclododecane, lead, selenomethionine, 17β trenbolone, chlorpyrifos, fluoxetine, and benzo[a]pyrene). The most common enriched pathways were metabolic pathways, biosynthesis of cofactors and biosynthesis of secondary metabolites, and chemical carcinogenesis, drug metabolism and metabolism of xenobiotics by Cytochrome P450. The RNA-sequencing database presented here may be used by the research community for multiple purposes, including for example, cross-species investigations, in depth analyses of a particular test compound, and transcriptomic meta-analyses.