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2ms
Targeted Transcriptomic Analysis Implicates Dysregulation of Glucose Metabolism, TGF-β and HIF1 Signaling Pathways in the Sarcomagenesis of WDLPS and DDLPS (USCAP 2024)
Our findings implicate a putative role for dysregulation in glucose metabolism, TGF-β and HIF1 signaling in the pathogenesis of both WD/DDLPS suggesting a possible proinflammatory tumor environment within WDLPS and subsequent activation of the TGF-β signaling pathway. Additional studies are warranted to understand the role of these pathways in the pathogenesis of WD/DDLPS.
Omic analysis
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HIF1A (Hypoxia inducible factor 1, alpha subunit) • TGFB1 (Transforming Growth Factor Beta 1) • SNAI1 (Snail Family Transcriptional Repressor 1)
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nCounter® Tumor Signaling 360 Panel
7ms
Distinct gene expression profiling explored using nanostring tumor signalling 360 panel with validations in different clinical stages of oral submucous fibrosis patients: A first Indian study (ESMO Asia 2023)
with validation in a large series of cases. The currenty study has evolved a panel of biomarkers, namely PRDX6, MLANA and AR to be potentially useful in identifying high-risk OSMF patients with an increased risk of OSCC development.
Clinical • Gene expression profiling • Tumor signal
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MLANA (Melan-A)
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nCounter® Tumor Signaling 360 Panel
9ms
Differential Expression of Genes in Type A and B3 Thymomas and Thymic Carcinomas (IASLC-WCLC 2023)
Type A and B3 thymomas and thymic carcinomas harbor clinically relevant, differentially expressed genes. Furthermore, a subset of these genes appears to be uniquely differentially expressed by TET subtype, which may be useful in distinguishing these entities. Further analysis to correlate gene expression with clinical features, outcome, and available target therapies will be performed.
MTAP (Methylthioadenosine Phosphorylase) • BAP1 (BRCA1 Associated Protein 1) • CHEK2 (Checkpoint kinase 2) • JAK3 (Janus Kinase 3) • CD5 (CD5 Molecule) • POU2F3 (POU Class 2 Homeobox 3) • CD80 (CD80 Molecule) • FOXC2 (Forkhead Box C2)
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nCounter® Tumor Signaling 360 Panel
almost2years
Distinct Gene Expression Profiles in Viable Hepatocellular Carcinoma Treated With Liver-Directed Therapy. (PubMed, Front Oncol)
Genes differentially expressed (<8 genes per patient) in multifocal disease were all upregulated in LDT-treated tumors from pathways involving epithelial mesenchymal transition, extracellular matrix remodeling, and/or inflammation potentially implicating intrahepatic metastases. Incomplete response to LDT may drive expression patterns that inhibit an effective anti-tumoral response through immune exclusion and induce intrahepatic spread.
Journal • Tumor mutational burden • PD(L)-1 Biomarker • Gene Expression Profile • IO biomarker
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TMB (Tumor Mutational Burden)
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nCounter® Tumor Signaling 360 Panel
over2years
[VIRTUAL] GENE EXPRESSION OF TUMOR SIGNALING PATHWAYS IN EARLY STAGE NAÏVE AND LIVER-DIRECTED THERAPY TREATED HEPATOCELLULAR CARCINOMA (AASLD 2021)
mRNA gene expression profiles between HCC tumors are remarkably similar . LDT history and radiographic characteristics of the lesions did not impact mRNA expression in genes for common cancer pathways and those involved in immune evasion and antitumoral immunity . The high overlap in mRNA expression profile of multifocal patients suggests intrahepatic spread as opposed to de novo HCC generation .
nCounter® Tumor Signaling 360 Panel
over2years
The Impact of Radiographic Tumor Thickness on the Complexity of the Tumor Immune Microenvironment in Malignant Pleural Mesothelioma (SITC 2021)
Conclusions Utilizing multi-platform immune profiling approaches, we observed a distinct relationship between the TT and immune signatures. Understanding underlying immune signatures underpinning the biology of thick versus thin MPM tumors provides insights to potential responsiveness to immune-based therapies and may inform on the design for future novel strategies relative to the disease extent based on TT.
PD(L)-1 Biomarker • IO biomarker
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CD8 (cluster of differentiation 8) • PD-1 (Programmed cell death 1) • IFNG (Interferon, gamma) • LAG3 (Lymphocyte Activating 3) • CTLA4 (Cytotoxic T-Lymphocyte Associated Protein 4) • TIGIT (T Cell Immunoreceptor With Ig And ITIM Domains 2) • CD4 (CD4 Molecule) • TNFRSF4 (TNF Receptor Superfamily Member 4)
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PD-1 expression • TNFRSF4 expression
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nCounter® Tumor Signaling 360 Panel
almost3years
GENE EXPRESSION PROFILES OF NAIVE AND LIVER-DIRECTED THERAPY TREATED LESIONS IN HEPATOCELLULAR CARCINOMA PATIENTS ON EXPLANT (AHPBA 2021)
mRNA gene expression profiles between HCC tumors are remarkably similar. LDT history and radiographic characteristics of the lesions did not impact mRNA expression in genes for common cancer pathways and those involved in immune evasion and antitumoral immunity. The high overlap in mRNA expression profile of multifocal patients suggests intrahepatic spread as opposed to de novo HCC generation.
Clinical • Gene Expression Profile
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nCounter® Tumor Signaling 360 Panel