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2ms
Potential predictive biomarkers for a fibroblast growth factor receptor (FGFR) inhibitor: Phase 1b trial of tasurgratinib (E7090) with endocrine therapies (ET) for ER+, HER2+ recurrent/metastatic breast cancer (BC) resistant to CDK4/6 inhibitors (SABCS 2024)
Part 1 included treatment with fulvestrant (FUL) 500 mg + E7090 (105 or 140 mg) or exemestane (EXE) 25 mg + E7090 (105 or 140 mg). These results emphasize that FGFR pathway activation evaluated with mRNA expression of selected genes at BL—rather than FGFR gene abnormalities—is a key molecular determinant for sensitivity to E7090, an FGFR inhibitor. Future validation of these biomarkers is necessary in a larger population of people with ER+/HER2− BC.
P1 data • Metastases
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • FGFR1 (Fibroblast growth factor receptor 1) • FGFR (Fibroblast Growth Factor Receptor) • CCND1 (Cyclin D1) • FGF19 (Fibroblast growth factor 19) • FGF3 (Fibroblast growth factor 3) • FGF4 (Fibroblast growth factor 4)
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ER mutation • FGFR1 expression
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FoundationOne® CDx • nCounter® PanCancer Pathways Panel
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fulvestrant • exemestane • Tasfygo (tasurgratinib)
4ms
Assessing chordoma heterogeneity: insights from primary and recurrent expression patterns (EORTC-NCI-AACR 2024)
Our initial findings distinguish recurrent chordomas from their primary counterparts based on cancer gene expression changes that encourage growth and proliferation, remodel the bone matrix environment, and evade the immune system. Continued investigation is needed to assemble a broader patient sample. Examining the pathways and genetic mutations across the chordoma disease progression may reveal novel therapeutic avenues for recurrent chordomas.
PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • HIF1A (Hypoxia inducible factor 1, alpha subunit) • CHI3L1 (Chitinase 3-like 1) • TGFB1 (Transforming Growth Factor Beta 1) • CDH2 (Cadherin 2) • ITGA3 (Integrin Subunit Alpha 3)
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nCounter® PanCancer Pathways Panel
9ms
Trial completion date
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EPCAM (Epithelial cell adhesion molecule) • VIM (Vimentin)
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nCounter® PanCancer Pathways Panel
9ms
Genomic landscape of metaplastic breast cancer from the AACR GENIE database (ESMO-BC 2024)
PIK3CA is also prevalent in MpBC and potentially targetable. Our findings may inform the development of novel targeted therapeutic regimens and improve outcomes for this rare but aggressive breast cancer subtype.
TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MYC (V-myc avian myelocytomatosis viral oncogene homolog) • KMT2C (Lysine Methyltransferase 2C) • FAT1 (FAT atypical cadherin 1) • RAD21 (RAD21 Cohesin Complex Component) • TGFB1 (Transforming Growth Factor Beta 1) • RECQL4( RecQ Like Helicase 4)
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TP53 mutation • PIK3CA mutation • PIK3CA amplification
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nCounter® PanCancer Pathways Panel
10ms
Subtyping of Small Cell Carcinoma Remains Unchanged After Recurrence, Supported by RNA Expression and Highly Concordant IHC Approaches (USCAP 2024)
The majority of recurrent SCLC retained their pre-treatment subtype, by both RNA expression and IHC evaluation. It suggests subtype is an intrinsic characteristic of SCLC regardless of treatment. IHC subtyping demonstrated high concordance with RNA expression thus can be utilized effectively in pathology practice.
Discordant
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YAP1 (Yes associated protein 1) • POU2F3 (POU Class 2 Homeobox 3) • ASCL1 (Achaete-Scute Family BHLH Transcription Factor 1) • NEUROD1 (Neuronal Differentiation 1)
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nCounter® PanCancer Pathways Panel
12ms
Targeting hepatocellular carcinoma: evaluation of vicinal diaryl isoxazole and pyrazole derivatives with implications for oxidative stress and senescence-mediated anti-tumor mechanisms (LCS 2024)
In summary, the study demonstrated the anti-tumor effects of compounds c1 and c2 associated with the induction of oxidative stress and senescence-dependent mechanisms. These compounds can be further evaluated as potential anti-cancer agents for HCC.
Oxidative stress
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CDK1 (Cyclin-dependent kinase 1)
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nCounter® PanCancer Pathways Panel
1year
Enhanced Genomic Stability in Monomorphic Post-Transplant Lymphoproliferative Disorders Is Driven By Distinct Mechanisms Stratified By EBV Status (ASH 2023)
Like HIV associated DLBCL, these results show that PTLD is more genomically stable than IC-DLBCL, and that genomic stability is further enhanced in EBV(+)PTLD which have increased expression of UPS related genes. In contrast, EBV(-)PTLD have increased expression of DNA damage repair genes, including RAD51. In summary, monomorphic DLBCL PTLD tumors have enhanced genomic stability that appears to be mediated by two distinct mechanisms stratified by EBV status.
Post-transplantation
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MSH6 (MutS homolog 6) • MSH2 (MutS Homolog 2) • FBXW7 (F-Box And WD Repeat Domain Containing 7) • CHEK2 (Checkpoint kinase 2) • RAD51 (RAD51 Homolog A) • FANCA (FA Complementation Group A) • EP300 (E1A binding protein p300) • CHEK1 (Checkpoint kinase 1) • NBN (Nibrin Nijmegen Breakage Syndrome 1 (Nibrin)) • CCNA2 (Cyclin A2) • PCNA (Proliferating cell nuclear antigen) • DDB2 (Damage Specific DNA Binding Protein 2) • ERCC3 (ERCC Excision Repair 3, TFIIH Core Complex Helicase Subunit) • FANCE (FA Complementation Group E) • POLG2 (DNA Polymerase Gamma 2, Accessory Subunit) • FANCB (FA Complementation Group B)
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RAD51 overexpression • ATM expression
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nCounter® PanCancer Pathways Panel
1year
Trial completion date
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EPCAM (Epithelial cell adhesion molecule) • VIM (Vimentin)
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CA9 expression
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nCounter® PanCancer Pathways Panel
over1year
Fibroblast Growth Factor 11 (FGF11) Promotes Progression and Cisplatin Resistance Through the HIF-1α/FGF11 Signaling Axis in Ovarian Clear Cell Carcinoma. (PubMed, Cancer Manag Res)
Mechanically, FGF11 was regulated by hypoxia-inducible factor-1α (HIF-1α) to modulate the DDP sensitivity. FGF11 was highly expressed in platinum-resistant OCCC tissues, promoting progression and resistance to DDP through the HIF-1α/FGF11 signaling axis.
Journal
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HIF1A (Hypoxia inducible factor 1, alpha subunit)
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HIF1A expression
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nCounter® PanCancer Pathways Panel
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cisplatin
over1year
Identification of potential biomarkers for diagnosis of lung adenocarcinoma (ERS 2023)
We identified a 78-gene signature that might help define a more accurate diagnosis for lung adenocarcinoma.; Cell and molecular biology; Endoscopy and interventional pulmonology; Pulmonary function testing; Epidemiology; Surgery; Public health; General respiratory patient care; Imaging
TLR4 (Toll Like Receptor 4)
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nCounter® PanCancer Pathways Panel
over1year
Gene signatures with clinical value for lung adenocarcinoma patients. (EACR 2023)
Among these DEGs, the expression of CHEK2 and BRCA1 genes might be promising predictive biomarkers.ConclusionWe identified potential gene signatures with diagnostic, prognostic and predictive value for LUAD patients. These findings may contribute to a tailored management for lung cancer patients, although further studies are needed.
Clinical • Gene Signature • BRCA Biomarker
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BRCA1 (Breast cancer 1, early onset) • CD19 (CD19 Molecule) • CHEK2 (Checkpoint kinase 2)
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BRCA1 expression
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nCounter® PanCancer Pathways Panel
over1year
Beyond the MAPK Pathway: Unraveling the Importance of RKIP in Lung Adenocarcinoma (EACR 2023)
Further, in silico data revealed that loss of RKIP was associated with worse overall survival in adenocarcinoma patients.ConclusionAltogether, these data show that RKIP's loss of expression induces lung adenocarcinoma aggressiveness. Importantly, this work pointed to the importance of exploring the role of RKIP, together with the tumor microenvironment and the immune system, to fully understand the consequences of RKIP's loss in tumorigenesis.
IL18 (Interleukin 18) • PI3K (Phosphoinositide 3-kinases)
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CXCL8 expression
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nCounter® PanCancer Pathways Panel
over1year
Differential molecular pathway expression according to chemotherapeutic response in ovarian clear cell carcinoma. (PubMed, BMC Womens Health)
The dysregulated genes in the PI3K, MAPK, and Cell Cycle-Apoptosis pathways identified and postulated mechanisms could help to probe biomarkers of OCCC platinum sensitivity, providing a research basis for further exploration of targeted therapy.
Journal
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PGR expression
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nCounter® PanCancer Pathways Panel
over1year
STIM2, A CALCIUM CENSOR POTENTIALLY INVOLVED IN THE PATHOPHYSIOLOGY OF ACUTE MYELOID LEUKEMIA (EHA 2023)
Our data evoke a negative prognostic role of STIM2 in AML. We highlight a role of STIM2 in cell proliferation and survival via protection against genotoxic stress and p53-dependent control of apoptosis and cell cycle in leukemic and myeloid cells. STIM2 acts as a Ca 2+ censor, detecting reticular calcium depletion and opening of ORAI channels at cell membrane.
IO biomarker
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BCL2 (B-cell CLL/lymphoma 2) • MCL1 (Myeloid cell leukemia 1) • BCL2L1 (BCL2-like 1) • CD34 (CD34 molecule) • CD14 (CD14 Molecule) • CASP8 (Caspase 8) • CASP9 (Caspase 9) • CDC25C (Cell Division Cycle 25C) • CDK1 (Cyclin-dependent kinase 1) • GLI2 (GLI Family Zinc Finger 2) • CCNB1 (Cyclin B1) • GNRP (Ras-Specific Guanine Nucleotide-Releasing Factor 1)
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nCounter® PanCancer Pathways Panel
over1year
LONG-TERM FOLLOW-UP AND GENE EXPRESSION PROFILES ASSOCIATED WITH OUTCOME IN PATIENTS WITH RELAPSED AGGRESSIVE B- OR T-CELL LYMPHOMAS TREATED IN THE NORDIC P[R]EBEN TRIAL (ICML 2023)
"The research was funded by: Servier Laboratoires Introduction: The Nordic Lymphoma Group (NLG) performed a dose-finding/expansion trial evaluating pixantrone, etoposide, bendamustine and, in CD20+ lymphomas, rituximab (P[R]EBEN) in patients (pts) with relapsed diffuse large B-cell (DLBCL) or peripheral T-cell (PTCL) lymphomas. The P[R]EBEN regimen is feasible on an out-pt basis and shows encouraging response rates and DoR. In PTCL, we observed an overrepresentation of AML/MDS, possibly related to the use of etoposide in multiple treatment lines. Gene expression analysis identified signatures and single genes predictive of long-term response."
Clinical
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CD20 (Membrane Spanning 4-Domains A1) • NCF4 (Neutrophil Cytosolic Factor 4) • NCOA3 (Nuclear Receptor Coactivator 3)
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nCounter® PanCancer Immune Profiling Panel • nCounter® PanCancer Pathways Panel
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Rituxan (rituximab) • etoposide IV • bendamustine • Pixuvri (pixantrone)
over1year
"Principle Test" for Isolation and Characterization of Circulating Cancer Cells (CTC)-CXCR4+. (clinicaltrials.gov)
P=N/A; N=47; Active, not recruiting; Sponsor:National Cancer Institute, Naples
New trial
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EPCAM (Epithelial cell adhesion molecule) • VIM (Vimentin)
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CA9 expression
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nCounter® PanCancer Pathways Panel
over1year
The digital expression profile of BMP7, CDKN2C, HIST1H3G, and PKMYT1 genes improves high-grade cervical lesion detection in liquid-based cytology. (PubMed, Cancer Cytopathol)
A gene expression profile that may be helpful in the identification of patients with CIN2+ was identified. This approach could be used together with currently used LBC in a clinical setting, allowing the identification of patients with high risk of CIN2+.
Journal • Cytology
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • CDKN2C (Cyclin Dependent Kinase Inhibitor 2C) • PKMYT1 (Protein Kinase Membrane Associated Tyrosine/Threonine 1)
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nCounter® PanCancer Pathways Panel
almost2years
Peposertib, a DNA-PK inhibitor, enhances the antitumor efficacy of anthracyclines in triple-negative breast cancer models in vitro and in vivo (AACR 2023)
In vivo efficacy was assessed in cell-line derived and patient-derived xenograft models. When administered in combination with doxorubicin, epirubicin, and etoposide, peposertib exhibited synergistic antiproliferative activity in TNBC cell lines in vitro. Our findings suggest that cotreatment with the DNA-PK inhibitor peposertib can enhance the efficacy of anthracycline/TOPO II-based chemotherapies.
Preclinical
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nCounter® PanCancer Pathways Panel
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etoposide IV • pegylated liposomal doxorubicin • epirubicin • peposertib (M3814)
almost2years
Pre-clinical activity of the Wnt/Beta-catenin pathway inhibitor RXC004 in models of biliary tract cancer (AACR 2023)
Background: RXC004 is a potent and selective inhibitor of the Wnt pathway regulator Porcupine, and is currently being investigated in phase 2 studies in patients with advanced cancers, including Biliary Tract Cancers (BTCs) +/- Pembrolizumab (NCT04907851 and NCT04907539). These data demonstrate that (1) RXC004 is efficacious in pre-clinical PDX models of BTC, (2) RXC004 induces multiple PD effects in BTC models at the level of gene expression, cell proliferation and cell differentiation, and (3) PDX models of BTC can be clustered based on baseline transcriptomic profiles of Wnt signalling genes and predict RXC004 sensitivity.
Preclinical • PD(L)-1 Biomarker
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MYC (V-myc avian myelocytomatosis viral oncogene homolog) • RNF43 (Ring Finger Protein 43) • MUC4 (Mucin 4, Cell Surface Associated) • MUC2 (Mucin 2) • MUC5AC (Mucin 5AC)
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RNF43 mutation • MUC4 expression
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nCounter® PanCancer IO 360™ Panel • nCounter® PanCancer Pathways Panel
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Keytruda (pembrolizumab) • zamaporvint (RXC004)
almost2years
Immunohistochemistry and Gene Expression Studies of Different Mesothelioma Histologic Subtypes, Suggesting Novel Treatment Considerations for Biphasic/Sarcomatoid Mesothelioma and High-Grade Epithelioid Mesothelioma (USCAP 2023)
We found that HG EMM has an IHC and gene expression profile deviated from LG EMM and positioned between LG EMM and BMM. SMM, BMM, and HG EMM have higher EZH2 and PD-L1 expression. Pathway dysregulation was observed in those subtypes, indicating potential therapeutic strategies.
PD(L)-1 Biomarker • IO biomarker
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EZH2 (Enhancer of zeste 2 polycomb repressive complex 2 subunit) • BAP1 (BRCA1 Associated Protein 1) • CCNA2 (Cyclin A2) • GAS1 (Growth Arrest Specific 1) • FGF7 (Fibroblast Growth Factor 7)
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PD-L1 overexpression • PD-L1-L
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nCounter® PanCancer Pathways Panel
almost2years
Transcriptional and Clinicopathological Implications of Granzyme B (GZMB)-negativity in Extranodal NK/T-cell lymphoma (USCAP 2023)
GEP and IHC showed that GZMB expression is highly heterogeneous in ENKTLs and associated with activation of JAK-STAT3 signaling and higher MYC expression. GZMB-negative ENKTL has distinct GEP and advanced clinical stage, although not prognostically significant in our dataset. These findings imply that GZMB is a potential biomarker mirroring a certain molecular subtype of ENKTL.
Clinical • IO biomarker
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MYC (V-myc avian myelocytomatosis viral oncogene homolog) • IL6 (Interleukin 6) • GZMB (Granzyme B) • PRF1 (Perforin 1)
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MYC expression • MYC negative • GZMB negative
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nCounter® PanCancer Pathways Panel
almost2years
Cytogenetically Normal Acute Myeloid Leukaemia (CN-AML) in Young Adults: High Expression of ATM serine/threonine kinase (ATM) Gene has Prognostic Implications (USCAP 2023)
High ATM expression is an important poor prognostic marker which is independent of conventional risk parameters and can be a potential therapeutic target with or without secondary DDS repair protein inhibitors (synthetic lethality) among AML-CN patients.
Clinical • PARP Biomarker
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TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3) • ATM (ATM serine/threonine kinase) • NPM1 (Nucleophosmin 1) • CEBPA (CCAAT Enhancer Binding Protein Alpha) • PARP1 (Poly(ADP-Ribose) Polymerase 1) • CHEK1 (Checkpoint kinase 1)
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FLT3 mutation • NPM1 mutation • CEBPA mutation • ATM expression
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nCounter® PanCancer Pathways Panel