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7d
Emphysema Shapes a Pro-Inflammatory Immune Microenvironment in Pulmonary Adenocarcinoma: A Pilot Immune Transcriptomic Profiling Study. (PubMed, Int J Mol Sci)
Given the small sample size and potential confounders, these results should be regarded as hypothesis-generating. Emphysema-associated immune remodeling may nevertheless represent an important biological factor worthy of validation in larger, independent cohorts.
Journal
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IL17A (Interleukin 17A) • IL6R (Interleukin 6 receptor) • KIR2DL3 (Killer Cell Immunoglobulin Like Receptor, Two Ig Domains And Long Cytoplasmic Tail 3) • SFRP1 (Secreted frizzled related protein 1) • TDO2 (Tryptophan 2,3-Dioxygenase) • CCL18 (C-C Motif Chemokine Ligand 18) • MMP7 (Matrix metallopeptidase 7)
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nCounter® PanCancer IO 360™ Panel
7d
A Three-Gene Interferon Signature Predicts Sustained Complete Remission in Pediatric AML Patients. (PubMed, Cancers (Basel))
Our results show the importance of the bone marrow microenvironment in pediatric AML and provide tools for a refined stratification of "standard-risk" patients, lacking adequate risk-oriented therapies. They also offer a promising guide for tackling immune pathways and exploiting immune-targeted therapies.
Journal • PARP Biomarker
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CD8 (cluster of differentiation 8) • GBP1 (Guanylate Binding Protein 1)
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nCounter® PanCancer IO 360™ Panel
1m
Characterization of Oncogenic and Immunogenic Profiling in Patients with Breast Cancer Tumors After Radiation Therapy. (PubMed, Int J Mol Sci)
Collectively, RT sensitized BC tumors by increasing the gene signature of TIS, cytotoxicity, apoptosis, and mammary stemness. RT facilitated an immunosuppressive environment and increased RCB, suggesting that the therapeutic potential of RT is highly individualized for each patient based on their unique tumor biology, genetic makeup, and TME.
Journal • IO biomarker
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nCounter® Breast Cancer 360™ Panel • nCounter® PanCancer IO 360™ Panel
10ms
Transcriptomic Profiling of Paired Primary Tumors and CNS Metastases in Breast Cancer Reveals Immune Modulation Signatures. (PubMed, Int J Mol Sci)
This study highlights transcriptional signatures associated with breast cancer CNS metastases, emphasizing the role of immune modulation in metastatic progression. The identified genes have potential as prognostic biomarkers and therapeutic targets, supporting the need for site-specific molecular profiling in metastatic breast cancer management.
Journal
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CXCL9 (Chemokine (C-X-C motif) ligand 9) • IL7R (Interleukin 7 Receptor) • CD79A (CD79a Molecule)
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nCounter® PanCancer IO 360™ Panel
10ms
Molecular comparison reveals distinct transcriptomic differences between uterine carcinosarcoma and papillary serous carcinoma distinguishable by DNA damage. (PubMed, Gynecol Oncol)
We present here a detailed, treatment-oriented molecular comparison between two histologically distinct endometrial cancer subtypes, UPSC and UCS. Assessment of unrepaired DNA damage and, by proxy, DNA repair capacity, gives context to the immune transcriptomic landscape. Our data suggests that the immune exhausted molecular landscape of UPSC may be more amenable to IO than that of UCS, while the DNA repair-robust UCS may be more vulnerable to agents targeting DNA Damage repair such as PARP inhibitors. Further, our data suggests that estimation of DNA repair capacity via RADD may be as treatment informative as molecular sequencing.
Journal • PARP Biomarker • IO biomarker
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nCounter® PanCancer IO 360™ Panel
10ms
Gene-expression signature predicts autoimmune toxicity in metastatic melanoma. (PubMed, J Immunother Cancer)
Whole-blood gene-expression profiling enables early identification of patients at high risk for irAEs during anti-PD-1 therapy. These predictive biomarkers may guide personalized toxicity monitoring in melanoma treatment.
Retrospective data • Journal • PD(L)-1 Biomarker • IO biomarker
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FASLG (Fas ligand) • ICOS (Inducible T Cell Costimulator) • TGFB2 (Transforming Growth Factor Beta 2)
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nCounter® PanCancer IO 360™ Panel
1year
Journal
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NCAM1 (Neural cell adhesion molecule 1) • SOX10 (SRY-Box 10) • CDC20 (Cell Division Cycle 20) • PLAG1 (PLAG1 Zinc Finger) • MAML2 (Mastermind Like Transcriptional Coactivator 2) • TRPS1 (Transcriptional Repressor GATA Binding 1)
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nCounter® PanCancer IO 360™ Panel
over1year
Intratumoral Injection of Autologous CD1c (BDCA-1)+ MyDC, Avelumab, and Ipilimumab Plus Systemic Nivolumab (clinicaltrials.gov)
P1/2, N=18, Recruiting, Universitair Ziekenhuis Brussel | Phase classification: P1 --> P1/2 | Trial completion date: Dec 2020 --> Dec 2025 | Trial primary completion date: Dec 2020 --> Dec 2025 | Completed --> Recruiting
Enrollment open • Phase classification • Trial completion date • Trial primary completion date
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CD8 (cluster of differentiation 8) • CD4 (CD4 Molecule) • CD1C (CD1c Molecule)
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nCounter® PanCancer IO 360™ Panel
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Opdivo (nivolumab) • Yervoy (ipilimumab) • Bavencio (avelumab)
over1year
Intratumoral administration of poly-ICLC enhances the antitumor effects of anti-PD-1. (PubMed, J Hepatobiliary Pancreat Sci)
Combination therapy with poly-ICLC, especially through IT route, and anti-PD-1 provides significantly greater antitumor effects than anti-PD-1 monotherapy in syngeneic mouse models of HCC.
Journal
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CD8 (cluster of differentiation 8) • IFNG (Interferon, gamma)
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nCounter® PanCancer IO 360™ Panel
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Hiltonol (poly-ICLC)
over1year
Transcriptomic profiling of primary and secondary lesions identified a potential crosstalk between MARCO+ macrophages and deregulated cancer-cell proliferation in mediating progression and therapy response of advanced clear cell renal cell carcinoma. (EMUC 2024)
Conclusions Overall, these preliminary data reveal a potential crosstalk between deregulated cancer cell proliferation and MARCO+Mφs in mediating disease progression and ICI resistance of ccRCC. Mechanistic experiments will be performed to confirm this assumption and to test whether targeting cancer cell-deregulated proliferation (e.g. by FDA-approved CDK4/6-TAs) could reshape ccRCC-mediated Mφ polarization and improve ICI efficacy.
IO biomarker • Metastases
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CDK4 (Cyclin-dependent kinase 4)
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nCounter® PanCancer IO 360™ Panel
over1year
Impact of Inflammation, Tumor and Product Attributes on Clinical Outcomes in Patients with Relapsed/Refractory Follicular Lymphoma Treated with Axicabtagene Ciloleucel (ASH 2024)
Conclusions : These findings underscore the significance of pre-treatment systemic inflammation (e.g. serum TNFa levels), product T cell phenotype, TMTV, CAR T-cell expansion, tumor IFN signaling and FLIPI as independent factors associated with clinical outcomes in patients with r/r FL treated with axi-cel. These results offer insights into mechanisms of resistance and toxicity, risk stratification, combination therapy and development of next-generation CAR-T therapy for patients with r/r FL.
Clinical data • Clinical • IO biomarker
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CD19 (CD19 Molecule) • IFNG (Interferon, gamma) • LAG3 (Lymphocyte Activating 3) • TNFA (Tumor Necrosis Factor-Alpha) • HAVCR2 (Hepatitis A Virus Cellular Receptor 2) • CCR7 (Chemokine (C-C motif) receptor 7)
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CD19 expression
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nCounter® PanCancer IO 360™ Panel
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Yescarta (axicabtagene ciloleucel)
over1year
T/NK Cell-Associated Transcriptomic Profile Informs Response to FLT3 Inhibitors in Acute Myeloid Leukemia (ASH 2024)
We then profiled a wet-lab cohort of 37 FLT3-mut AML patients treated either with Midostaurin plus chemotherapy (M) or Gilteritinib (G) at Bologna Hematology Institute by using the PanCancer IO 360 Panel (NanoString Technologies, San Diego, CA). S.R. & A.C. equally contributed
FLT3 (Fms-related tyrosine kinase 3) • CD8 (cluster of differentiation 8) • CD4 (CD4 Molecule) • GLI2 (GLI Family Zinc Finger 2)
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FLT3 mutation
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nCounter® PanCancer IO 360™ Panel
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Xospata (gilteritinib) • midostaurin