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BIOMARKER:

TSC1 deletion

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Other names: TSC1, TSC Complex Subunit 1, Tuberous Sclerosis 1 Protein, TSC, Tuberous Sclerosis 1, Truncated Hemartin, KIAA0243, LAM
Entrez ID:
Related biomarkers:
5ms
Characterization of Epilepsy in the TSC1 Stochastic Mouse Model (AES 2023)
Treatment groups received mTOR inhibitor everolimus (0.3 or 0.03 mg/kg, IP 3x per week) beginning at postnatal day 28 through day 54... This data is consistent with other TSC epilepsy models, supporting the utility of the TSC1 stochastic mouse model for assessment of seizures.
Preclinical
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TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1) • GFAP (Glial Fibrillary Acidic Protein)
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TSC1 deletion • TSC1 deletion
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everolimus
8ms
Isolated subependymal giant cell astrocytoma (SEGA) in the absence of clinical tuberous sclerosis: two case reports and literature review. (PubMed, Childs Nerv Syst)
Cases of SEGA outside of the context of TSC are exceedingly rare, with only 48 cases previously described. The genetic mechanisms and treatment response of these lesions are poorly understood. To date, these lesions appear to respond well to mTOR inhibitors and may behave similarly to SEGAs associated with TSC. However, given that experience is extremely limited, these cases should be followed long term to better understand their natural history and treatment response.
Review • Journal
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TSC1 (TSC complex subunit 1)
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TSC1 mutation • TSC1 deletion • TSC1 deletion
9ms
Cerebrospinal fluid as a liquid biopsy for molecular characterization of brain metastasis in patients with non-small cell lung cancer. (PubMed, Lung Cancer)
Our approach of combining ctDNA and exosomal RNA analyses in CSF presents a potential surrogate for BM biopsy. The specific variants that were only observed in the CNS compartments could serve as targets for individually tailored therapies in NSCLC patients with BM.
Journal • Liquid biopsy • IO biomarker • Biopsy
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EGFR (Epidermal growth factor receptor) • BCL2 (B-cell CLL/lymphoma 2) • NRG1 (Neuregulin 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • CD79B (CD79b Molecule) • TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1) • NOTCH3 (Notch Receptor 3) • MSH3 (MutS Homolog 3) • FGF10 (Fibroblast Growth Factor 10) • HNF1A (HNF1 Homeobox A)
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TSC1 mutation • TSC2 mutation • CD79B mutation • TSC1 deletion
10ms
Defining the Chronology of Epithelial Transformation in Renal Cell Carcinoma Using a Novel Mouse Model (EACR 2023)
Preliminary data at late timepoints identify unique signatures present after transformation. We will next analyze early timepoints to identify initiating driving events of epithelial transformation.
Preclinical
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TSC1 mutation • TSC1 deletion
1year
TREM2 acts as a receptor for IL-34 to suppress acute myeloid leukemia in mice. (PubMed, Blood)
Furthermore, TREM2 was downregulated in AML patients and associated with a poor prognosis. This study identified TREM2 as a novel receptor for IL-34, indicating a promising strategy for overcoming AML differentiation blockade in AML patients.
Preclinical • Journal
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TREM2 (Triggering Receptor Expressed On Myeloid Cells 2)
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TSC1 deletion • TSC1 deletion
1year
Biomarker analysis from AMPECT correlating response to nab-sirolimus with TSC1 and TSC2 inactivating alterations (AACR 2023)
A variety of pathogenic inactivating alterations were observed in TSC1 and TSC2 genes, though TSC2 mutations were most commonly frameshift mutations; no recurring mutations were observed. A tumor-agnostic study (PRECISION 1: NCT05103358) is now recruiting patients with pathogenic inactivating TSC1 or TSC2 alterations to further examine these biomarker findings.
Late-breaking abstract
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TP53 mutation • RB1 mutation • TSC1 mutation • TSC2 mutation • TSC1 deletion
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OncoPanel™ Assay
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Fyarro (nanoparticle albumin-bound rapamycin)
over1year
AKT-mTORC1 reactivation is the dominant resistance driver for PI3Kβ/AKT inhibitors in PTEN-null breast cancer and can be overcome by combining with Mcl-1 inhibitors. (PubMed, Oncogene)
Parallel CRISPR screens in 3 PTEN-null breast cancer cell lines identified genes mediating resistance to capivasertib (AKT inhibitor) and AZD8186 (PI3Kβ inhibitor). The Mcl-1i + PI3Kβ/AKTi combination was effective across a panel of breast cancer cell lines with PIK3CA and PTEN mutations, and delivered increased anti-tumor benefit in vivo. This study demonstrates that different resistance drivers to PI3Kβi and AKTi converge to reactivate PI3K-AKT or mTOR signalling and combined inhibition of Mcl-1 and PI3K-AKT has potential as a treatment strategy for PI3Kβi/AKTi sensitive and resistant breast tumours.
Journal
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HER-2 (Human epidermal growth factor receptor 2) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • PTEN (Phosphatase and tensin homolog) • ERBB3 (V-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3) • TSC1 (TSC complex subunit 1) • PIK3CB (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta) • LAMTOR4 (Late Endosomal/Lysosomal Adaptor) • PIK3R2 (Phosphoinositide-3-Kinase Regulatory Subunit 2 )
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PIK3CA mutation • PTEN mutation • TSC1 deletion • TSC1 deletion
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Truqap (capivasertib) • AZD8186
over1year
Differential impact of PI3K/AKT/mTOR signaling on tumor initiation and progression in animal models of prostate cancer. (PubMed, Prostate)
Our results for genetically engineered mouse models suggest a differential role of the PI3K/AKT/mTOR signaling nodes in prostate cancer initiation and progression, but the underlying molecular mechanisms remain unaddressed.
Preclinical • Journal
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PTEN (Phosphatase and tensin homolog) • TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1) • EIF4EBP1 (Eukaryotic translation initiation factor 4E binding protein 1)
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TSC1 deletion
2years
Genetic context of oncogenic drivers dictates vascular sarcoma development in aP2-Cre mice. (PubMed, J Pathol)
Genetic dissection of the spectrum of vascular tumors identified genes specifically regulated in the aggressive murine angiosarcomas that are also enriched in human angiosarcoma. The genetic dissection driving the transition across the malignant spectrum of endothelial sarcomas provides an opportunity to identify key determinants of the malignant phenotype, novel therapies for angiosarcoma, and novel in vivo models to further explore angiosarcoma pathogenesis.
Preclinical • Journal
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KRAS (KRAS proto-oncogene GTPase) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • DICER1 (Dicer 1 Ribonuclease III)
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TSC1 deletion • KRAS deletion • TSC1 deletion
2years
Cancer Predisposition Genetic Analysis in Children with Brain Tumors Treated at a Single Institution in Japan. (PubMed, Oncology)
This is the first cancer-related germline analysis with detailed clinical information reported in Japanese children with brain tumors. The prevalence was almost equivalent to that in white children.
Clinical • Journal
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MLH1 (MutL homolog 1) • PTCH1 (Patched 1) • CHEK2 (Checkpoint kinase 2) • SMARCB1 (SWI/SNF Related, Matrix Associated, Actin Dependent Regulator Of Chromatin, Subfamily B, Member 1) • TSC1 (TSC complex subunit 1) • WRN (WRN RecQ Like Helicase) • FANCI (FA Complementation Group I)
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SMARCB1 deletion • TSC1 deletion
2years
Landscape of TSC1 and TSC2 mutations in patients with advanced solid cancers (AACR 2022)
Finally, we show that the combined annual US incidence of patients with TSC1 and TSC2 mutations is on average (n = 3 clinical genomic cohorts) higher than 17 of 23 other common targetable mutations. Our approach is now being used to estimate the population size of other medically relevant mutations and identify associated genomic targets for improved clinical trial design.
Clinical • Tumor Mutational Burden • IO biomarker
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TMB (Tumor Mutational Burden) • FGFR3 (Fibroblast growth factor receptor 3) • TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1)
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TSC1 mutation • TSC2 mutation • TSC1 deletion • TSC1 deletion
over2years
Hypoxic Characteristic Genes Predict Response to Immunotherapy for Urothelial Carcinoma. (PubMed, Front Cell Dev Biol)
In this investigation, a four-gene hypoxia risk model was developed to evaluate the degree of hypoxia and prognosis of ICI treatment, which showed a promising clinical prediction value in MUC. Furthermore, the hypoxia risk model revealed a close relationship between hypoxia and the tumor immune microenvironment.
Journal • IO biomarker
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TP53 (Tumor protein P53) • RB1 (RB Transcriptional Corepressor 1) • TSC1 (TSC complex subunit 1) • KDM6A (Lysine Demethylase 6A)
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TP53 mutation • RB1 deletion • RB1 mutation • TSC1 mutation • TSC1 deletion
over2years
An unexpected tumor suppressor role of SQSTM1/p62 in liver tumorigenesis. (PubMed, Autophagy)
To our surprise, hepatocytic deletion of Sqstm1 promotes liver tumorigenesis in liver-specific atg5 and tsc1 double-knockout mice. Overall, these findings reveal a complex interplay among autophagy, SQSTM1 and MTORC1 and their differential roles either as oncogenic or tumor suppressor in liver tumorigenesis depending on the disease stage and context.
Journal
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SQSTM1 (Sequestosome 1) • ATG5 (Autophagy Related 5)
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TSC1 deletion
over2years
Oncocytic renal neoplasms with diffuse keratin 7 immunohistochemistry harbor frequent alterations in the mammalian target of rapamycin pathway. (PubMed, Mod Pathol)
At a median follow-up of 68 months (2-147 months) for 15 patients, all were alive without disease. Oncocytic renal tumors with diffuse keratin 7 labeling show frequent alterations in the TSC/MTOR pathway, despite more oncocytoma-like morphology than initially described in LOT, likely expanding the morphologic spectrum of the latter.
Journal
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MET (MET proto-oncogene, receptor tyrosine kinase) • PTEN (Phosphatase and tensin homolog) • FGFR3 (Fibroblast growth factor receptor 3) • STK11 (Serine/threonine kinase 11) • CDH1 (Cadherin 1) • TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1) • EPCAM (Epithelial cell adhesion molecule) • KRT7 (Keratin-7) • FOXP1 (Forkhead Box P1) • MME (Membrane Metalloendopeptidase) • PAX8 (Paired box 8)
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MET amplification • STK11 mutation • TSC1 mutation • TSC2 mutation • MTOR mutation • FGFR3 amplification • TSC1 deletion • PAX8 positive • TSC1 deletion
over2years
Hepatocytic p62 suppresses ductular reaction and tumorigenesis in mouse livers with mTORC1 activation and defective autophagy. (PubMed, J Hepatol)
These results reveal previously undescribed functions of hepatic p62 in suppressing tumorigenesis and regulating liver cell repopulation and metabolic reprogramming resulting from persistent mTORC1 activation and defective autophagy.
Preclinical • Journal
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SQSTM1 (Sequestosome 1)
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TSC1 deletion
3years
mTOR activation initiates renal cell carcinoma development by coordinating ERK and p38MAPK. (PubMed, Cancer Res)
Thus, mTOR activation in combination with inactivation of the p38MAPK-p53/p16 pathway drives RCC development from renal proximal tubules. Moreover, this study uncovers previously unidentified mechanisms by which mTOR controls cell proliferation and suggests the MEK-ERK axis to be a potential target for treatment of RCC.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
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CDKN2A deletion • TSC1 deletion • TSC1 deletion
3years
VEGFR Inhibitors for Uterine Metastatic Perivascular Epithelioid Tumors (PEComa) Resistant to mTOR Inhibitors. A Case Report and Review of Literature. (PubMed, Front Oncol)
An everolimus and denosumab treatment was initiated...Following a literature review of the possible therapeutic options, we initiated a second line treatment by pazopanib. This treatment resulted in regression of the subcutaneous lesions and stability of lung and bone metastases. In this challenging, rare setting, our report suggests single agent, anti-angiogenic, tyrosine kinase inhibitor to be effective as second line treatment of metastatic uterine PEComa progressing on mTOR inhibitors.
Clinical • Review • Journal
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TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1)
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TSC1 deletion
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everolimus • Votrient (pazopanib) • Prolia (denosumab)
over3years
Does neoadjuvant targeted therapy provide an opportunity for resectable EGFR-mutant lung cancer: a real-world retrospective study. (PubMed, J Thorac Dis)
Neoadjuvant EGFR-TKI appears to be more effective than conventional chemotherapy for EGFR-mutant NSCLC patients. This study provides evidence that needs to be investigated further in randomized controlled trials (RCT).
Retrospective data • Journal • Real-World Evidence
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EGFR (Epidermal growth factor receptor) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • PTEN (Phosphatase and tensin homolog) • STAT3 (Signal Transducer And Activator Of Transcription 3) • TSC1 (TSC complex subunit 1)
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EGFR mutation • PIK3CA mutation • EGFR L858R • EGFR exon 19 deletion • EGFR T790M • PTEN mutation • TSC1 mutation • STAT3 mutation • EGFR mutation + PTEN mutation • TSC1 deletion • BCL2L11 deletion
over3years
[VIRTUAL] MTOR Activated High-Grade Oncocytic Tumor of the Kidney: Case Report of a Yet Unclassified Subtype (CAP 2020)
The patient was free of recurrence at 3-year follow-up. Ongoing recognition and follow-up of these cases is essential to evaluate their inclusion as a distinct entity in the renal tumor classification.
Clinical
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KIT (KIT proto-oncogene, receptor tyrosine kinase) • TSC1 (TSC complex subunit 1) • TFE3 • PAX8 (Paired box 8)
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MTOR mutation • TSC1 deletion
over3years
High glucose concentrations mask cellular phenotypes in a stem cell model of tuberous sclerosis complex. (PubMed, Epilepsy Behav)
As TSC is potentially caused by a disruption of the mechanistic target of rapamycin (mTOR) pathway, a main integrator of metabolic information and intracellular signaling, we aimed to examine the impact of different glucose concentrations in the culture media on cellular phenotypes implicated in tuber characteristics...These phenotypes only become apparent when differentiating TSC2+/+ and TSC2-/- cultures in more physiologically relevant conditions of 5 mM glucose suggesting that the careful consideration of culture conditions is vital to ensuring biological relevance and translatability of stem cell models for neurological disorders such as TSC. This article is part of the Special Issue "Proceedings of the 7th London-Innsbruck Colloquium on Status Epilepticus and Acute Seizures".
Journal
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TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1)
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TSC2 mutation • TSC1 deletion
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sirolimus
over3years
"Renal Cell Carcinoma With Leiomyomatous Stroma" Harbor Somatic Mutations of TSC1, TSC2, MTOR, and/or ELOC (TCEB1): Clinicopathologic and Molecular Characterization of 18 Sporadic Tumors Supports a Distinct Entity. (PubMed, Am J Surg Pathol)
Our findings argue that these tumors represent the sporadic counterpart to morphologically identical tumors occurring in TSC patients. Finally, the data support that RCCLMS is a novel subtype of RCC with unique morphologic, immunohistochemical, and molecular characteristics that is distinct from CCRCC and clear cell-papillary RCC.
Clinical • Journal
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mTOR (Mechanistic target of rapamycin kinase) • VHL (von Hippel-Lindau tumor suppressor) • TSC2 (TSC complex subunit 2) • TSC1 (TSC complex subunit 1)
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TSC1 mutation • TSC2 mutation • MTOR mutation • TSC1 deletion