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BIOMARKER:

TFE3 translocation

i
Other names: TFE3 , Transcription Factor Binding To IGHM Enhancer 3, Class E Basic Helix-Loop-Helix Protein, Transcription Factor E Family, Member A, BHLHe33 , Transcription Factor For Immunoglobulin Heavy-Chain Enhancer 3, Transcription Factor For IgH Enhancer, Transcription Factor E3, RCCP2 , RCCX1, TFEA
Entrez ID:
Related biomarkers:
14d
A framework for target discovery in rare cancers. (PubMed, bioRxiv)
Finally, we applied our model to predict gene dependencies in tumors from the TCGA (11,373 tumors; 28 lineages) and multiple additional rare cancers (958 tumors across 16 types, including 13 distinct subtypes of kidney cancer), nominating potentially actionable vulnerabilities in several poorly-characterized cancer types. Our results couple unbiased functional genetic screening with a predictive model to establish a landscape of candidate vulnerabilities across cancers, including several rare cancers currently lacking in potential targets.
Journal
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MCL1 (Myeloid cell leukemia 1) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
30d
TFE3-Rearranged Tumors of the Kidney: An Emerging Conundrum. (PubMed, Cancers (Basel))
It is not well understood why similar gene fusions can give rise to renal tumors with different morpho-immunophenotypes, which may contribute to the recent disagreement regarding their classification. However, as these two entities, respectively, epithelial and mesenchymal in nature, are widely recognized by the pathology community and their clinicopathologic features well established, we overall believe it is still better to retain the names TFE3-rearranged renal cell carcinoma and TFE3-rearranged PEComa.
Review • Journal
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YAP1 (Yes associated protein 1) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • ASPSCR1 (ASPSCR1 Tether For SLC2A4) • CTSK (Cathepsin K) • PAX8 (Paired box 8)
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TFE3 translocation • TFE3 fusion
6ms
A rare case of TFEB/6p21/VEGFA-amplified renal cell carcinoma diagnosed by whole-exome sequencing: clinicopathological and genetic feature report and literature review. (PubMed, Diagn Pathol)
We clarified the patient's challenging diagnosis and discussed the clinicopathology, immunophenotype, differential diagnosis, and molecular genetic information regarding TFEB/6p21/VEGFA-amplified RCC via exome analysis and a literature review.
Review • Journal • Tumor mutational burden • PARP Biomarker • PD(L)-1 Biomarker • IO biomarker
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TMB (Tumor Mutational Burden) • ATM (ATM serine/threonine kinase) • VEGFA (Vascular endothelial growth factor A) • CDH1 (Cadherin 1) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • MRE11A (MRE11 homolog, double strand break repair nuclease) • CCND3 (Cyclin D3) • MME (Membrane Metalloendopeptidase) • TGFB1 (Transforming Growth Factor Beta 1) • MLANA (Melan-A) • TFEB (Transcription Factor EB 2)
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ATM mutation • TMB-L • MRE11A mutation • TFE3 translocation
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Lynparza (olaparib) • Talzenna (talazoparib) • Zejula (niraparib) • Rubraca (rucaparib)
7ms
Multiple and hereditary renal tumors: a review for radiologists. (PubMed, Radiologia (Engl Ed))
Relevant data for the radiologist in major RC hereditary syndromes are presented: von-Hippel-Lindau, Chromosome-3 translocation, BRCA-associated protein-1 mutation, RC associated with succinate dehydrogenase deficiency, PTEN, hereditary papillary RC, Papillary thyroid cancer- Papillary RC, Hereditary leiomyomatosis and RC, Birt-Hogg-Dubé, Tuberous sclerosis complex, Lynch, Xp11.2 translocation/TFE3 fusion, Sickle cell trait, DICER1 mutation, Hereditary hyperparathyroidism and jaw tumor, as well as the main syndromes of Wilms tumor predisposition. The concept of "non-hereditary" familial RC and other malignant and benign entities that can present as multiple renal lesions are discussed.
Review • Journal • BRCA Biomarker
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PTEN (Phosphatase and tensin homolog) • BRCA (Breast cancer early onset) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • DICER1 (Dicer 1 Ribonuclease III)
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PTEN mutation • BRCA mutation • TFE3 translocation • TFE3 fusion
7ms
D-mannose targets PD-1 to lysosomal degradation and enhances T cell-mediated anti-tumor immunity. (PubMed, Cancer Lett)
Furthermore, D-mannose treatment dramatically improves the therapeutic efficacy of MEK inhibitor (MEKi) trametinib in vivo. Our findings unveil a universally unrecognized anti-tumor mechanism of D-mannose by destabilizing PD-1 and provide strategies to enhance the efficacy of both immune checkpoint blockade (ICB) and MEKi -based therapies.
Journal • PD(L)-1 Biomarker • IO biomarker
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PD-1 (Programmed cell death 1) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
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Mekinist (trametinib)
10ms
Therapeutic strategies and predictive models for Xp11.2 translocation/TFE3 gene fusion renal cell carcinoma in adults based on Chinese dual centers. (PubMed, Aging (Albany NY))
This study not only proposed a high-precision clinical prediction model composed of various variables for the early diagnosis of Xp11.2 translocation/TFE3 gene fusion renal cell carcinoma but also optimized therapeutic strategies through prognostic analysis.
Journal • Predictive model
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation • TFE3 fusion
11ms
Multicystic Clear Cell Renal Tumors With Low-grade Nuclear Features: Time to Include TFE3 Translocation-associated Carcinomas. (PubMed, Adv Anat Pathol)
For example, most MED15::TFE3 fusion associated RCCs exhibit multilocular cystic morphology, mimicking multilocular cystic renal neoplasm of low malignant potential. Here we present a case of MED15::TFE3 RCC in an older adult and review the literature with an emphasis on practical diagnostic approaches for predominantly cystic, low-grade, clear cell renal tumors.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation • TFE3 fusion
1year
HISTOLOGY SPECIFIC INTRATUMORAL B-CELL BIOLOGY IN ALVEOLAR SOFT-PART SARCOMAS (ASPS) IN RESPONSE TO DURVALUMAB-TREMELIMUMAB (D-T) (CTOS 2023)
The way in which the B-cells in ASPS may contribute to the exceptional responses seen with D-T may be related more to the pre-existing numbers of B-cells and independent of lymphoid aggregation. Further work in this area should focus on the mechanisms underlying this ASPS-specific intratumoral B-cell and to enhance presence of B-cells in other sarcoma types. Additional analyses on these trial samples are ongoing to further delineate the role B-cells in ASPS response to D-T.
PD(L)-1 Biomarker • IO biomarker
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CD20 (Membrane Spanning 4-Domains A1) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • ASPSCR1 (ASPSCR1 Tether For SLC2A4)
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CD20 positive • TFE3 translocation
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Imfinzi (durvalumab) • Imjudo (tremelimumab)
over1year
AKR1B10 is a New Sensitive and Specific Marker for Fumarate Hydratase-Deficient Renal Cell Carcinoma. (PubMed, Mod Pathol)
AKR1B10+/2SC+/FH- cases can be diagnosed as FH-deficient RCC. Patients with AKR1B10+/2SC+/FH+ are highly suspicious for FH-deficient RCC and should be referred for FH genetic tests.
Journal
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FH (Fumarate Hydratase) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • AKR1B10 (Aldo-Keto Reductase Family 1 Member B10)
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TFE3 translocation
over1year
Lessons from 801 clinical TFE3/TFEB fluorescence in situ hybridization assays performed on renal cell carcinoma suspicious for MiTF family aberrations. (PubMed, Am J Clin Pathol)
Clinical TFE3/TFEB FISH assays successfully identified and confirmed rare MiTF-RCC with TFE3 and TFEB rearrangements. Although morphologic and biomarker features associated with a kidney tumor may be suggestive of MiTF-RCC, clinical TFE3/TFEB FISH assays are crucial for a confirmation and definitive subclassification of patients with MiTF-RCC.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • MITF (Melanocyte Inducing Transcription Factor) • TFEB (Transcription Factor EB 2)
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TFE3 translocation • TFEB translocation
over1year
Ultrasound diagnosis of renal cell carcinoma associated with Xp11.2 translocation/TFE3 gene fusion in children and adolescents. (PubMed, Curr Med Imaging)
Renal cell carcinoma associated with Xp11.2 translocation/TFE3 gene fusion in children and adolescents are mostly large cystic and solid mixed echo masses, with high echo of solid components, and often accompanied by cystic changes and calcification. Its ultrasonic manifestations have certain characteristics. Color Doppler ultrasound has a certain diagnostic value for this disease.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • CA9 (Carbonic anhydrase 9)
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TFE3 translocation • TFE3 fusion
over1year
Unravelling the mysteries of Xp11.2 translocation-associated renal cell carcinoma: A case report with a review of the literature. (PubMed, Cytopathology)
Cytomorphologic and immunocytochemical features of TFE3 translocation-associated renal cell carcinoma.
Clinical • Observational data • Retrospective data • Review • Clinical Trial,Phase III • Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
over1year
Cystic MED15::TFE3 translocation renal cell carcinoma: histologic mimicker of multilocular cystic renal neoplasm of low malignant potential with review of the literature. (PubMed, Hum Pathol)
To date, 12 of the 15 MED15::TFE3 fusion renal cell carcinomas published in the literature are cystic, with three being extensively cystic. Thus, if a multilocular cystic renal neoplasm is encountered in a kidney specimen, translocation renal cell carcinoma should be included in the differential diagnosis as cystic MED15::TFE3 tRCCs carry an uncertain prognosis making recognition for future characterization necessary.
Review • Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • CA9 (Carbonic anhydrase 9) • MME (Membrane Metalloendopeptidase)
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TFE3 translocation • TFE3 fusion
over1year
A novel VCP::TFE3 gene fusion resulting from t(X;9)(p11.23;p13.3) chromosome translocation in TFE3 rearranged renal cancer cell carcinoma. (PubMed, Genes Chromosomes Cancer)
The patient had metastatic disease and was treated by surgery and five lines of therapy, including 24 months of stable disease on the MET inhibitor cabozantinib, with an overall survival of 7?years. In addition to expanding the spectrum of TFE3 rearrangement partners, this report highlights the complexity of these tumors and supports the development of translational programs in renal cancer.
Journal
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IGH (Immunoglobulin Heavy Locus) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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MET overexpression • TFE3 translocation • TFE3 fusion
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Cabometyx (cabozantinib tablet)
over1year
Imaging findings, clinical and pathological characters of 28 patients with Xp11.2/TFE3 translocation renal cell carcinoma. (PubMed, J Cancer Res Ther)
Xp11.2 RCC showed moderate enhancement during the renal corticomedullary phase and delayed enhancement during the nephrographic phase and excretory phase. Xp11.2 RCC has a higher incidence in children.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
almost2years
A case of TFE3 translocation renal cell carcinoma with rare morphological features and literature review. (PubMed, Indian J Pathol Microbiol)
This case was a TFE3 translocation RCC with rare morphological features. Through this case report, we emphasize the importance of in situ detection of TFE3 gene translocation and protein in TFE3 translocation RCC.
Review • Journal
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KIT (KIT proto-oncogene, receptor tyrosine kinase) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • CA9 (Carbonic anhydrase 9) • MME (Membrane Metalloendopeptidase) • MLANA (Melan-A) • PAX8 (Paired box 8)
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CA9 expression • TFE3 translocation
almost2years
Molecular Characterization of TFE3 rearranged Renal Cell Carcinoma: A Study of Twenty-one Cases (USCAP 2023)
TFE3 rearranged RCC has different molecular alterations compared to cRCC and pRCC. Despite it having a relatively cold TME compared to pRCC and ccRCC, increased PDL1+ rates in TFE3 translocation RCC suggest a potential benefit from immune checkpoint inhibitor therapy and warrants further investigation in this rare RCC subtype.
Clinical • PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • PBRM1 (Polybromo 1) • VHL (von Hippel-Lindau tumor suppressor) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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PD-L1 expression • PBRM1 mutation • VHL mutation • TFE3 translocation • TFE3 fusion
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VENTANA PD-L1 (SP142) Assay • MI Tumor Seek™
almost2years
MiTF Family Altered Renal Cell Carcinoma: An 8-year Review of 781 Clinical TFE3/TFEB FISH Assays Performed at a Tertiary Institution (2014-2022) (USCAP 2023)
Clinical TFE3 / TFEB FISH assays successfully identified those rare MiTF-RCC with TFE3 and TFEB rearrangements. TFE3 and TFEB translocations tend to occur in relatively younger patients TFEB amplifications occur more frequently than TFEB translocations in renal tumors and manifest largely in older patients.
Clinical • Review
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • MITF (Melanocyte Inducing Transcription Factor) • TFEB (Transcription Factor EB 2)
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TFE3 translocation • TFEB translocation
2years
Clinicopathological features and prognosis of TFE3-positive renal cell carcinoma. (PubMed, Front Oncol)
This study found that nuclear TFE3 expression is not specific to the Xp11.2 translocation RCC. Moreover, the positive TFE3 expression is associated with tumor progression and poor prognosis in patients with RCC irrespective of the presence of TFE3 translocation.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
2years
Merlin immunohistochemistry is useful in diagnosis of tumours within the spectrum of biphasic hyalinizing psammomatous renal cell carcinoma. (PubMed, Histopathology)
In this study, merlin IHC was ~92% sensitive and ~94% specific for BHP RCC. These data suggest that merlin IHC is a reliable surrogate marker for the presence of underlying NF2 gene inactivation, being diagnostically useful to identify BHP RCC.
Journal
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NF1 (Neurofibromin 1) • NF2 (Neurofibromin 2) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • TFEB (Transcription Factor EB 2)
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NF1 mutation • NF2 mutation • TFE3 translocation
over2years
5mC and H3K9me3 of TRAF3IP2 promoter region accelerates the progression of translocation renal cell carcinoma. (PubMed, Biomark Res)
TRAF3IP2 functions as an oncogene in NONO-TFE3 tRCC progression and might serve as a novel target for NONO-TFE3 tRCC therapy.
Journal
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NOTCH1 (Notch 1) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • DNMT1 (DNA methyltransferase 1) • HNRNPK (Heterogeneous Nuclear Ribonucleoprotein K) • SETDB1 (SET Domain Bifurcated Histone Lysine Methyltransferase 1) • NONO (Non-POU Domain Containing Octamer Binding)
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TFE3 translocation
over2years
Clinicopathologic, treatment and prognosis study of 46 Xp11.2 translocation/TFE3 gene fusion renal cell carcinomas. (PubMed, BMC Urol)
Xp11.2 translocation RCC is a type of renal cell carcinoma with a relatively low incidence and various prognoses. Early-stage Xp11.2 translocation RCCs have a similar prognosis to most typical RCCs, but late-stage Xp11.2 translocation RCCs can lead to poor oncological outcomes.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation • TFE3 fusion
over2years
"Papillary Adenoma-like" Renal Tumor with TFE3 Gene Rearrangement, A Potential Precursor to or Early Event in the Development of TFE3 Translocation Renal Cell Carcinoma. (PubMed, Int J Surg Pathol)
These tumors are likely a precursor to or represent an early event in the development of TFE3 translocation renal cell carcinomas. An understanding of such tumors to translocation renal cell carcinoma progression can provide insight into the pathogenic mechanism, and ultimately aid the diagnosis and management of translocation renal cell carcinoma.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • NKX2-1 (NK2 Homeobox 1) • CA9 (Carbonic anhydrase 9) • KRT7 (Keratin-7) • MME (Membrane Metalloendopeptidase) • CTSK (Cathepsin K) • PAX8 (Paired box 8)
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TFE3 translocation
over2years
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
over2years
Both SUMOylation and ubiquitination of TFE3 fusion protein regulated by androgen receptor are the potential target in the therapy of Xp11.2 translocation renal cell carcinoma. (PubMed, Clin Transl Med)
Androgen and AR function as facilitators in Xp11.2 tRCC progression and may be a novel therapeutic target for Xp11.2 tRCC. The combined use of AR antagonist MDV3100 and UCHL1 inhibitor 6RK73 increased both the SUMOylation and ubiquitination of the PRCC-TFE3 fusion protein.
Journal
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AR (Androgen receptor) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • PRCC (Proline Rich Mitotic Checkpoint Control Factor)
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PRCC-TFE3 fusion • TFE3 translocation • TFE3 fusion
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Xtandi (enzalutamide capsule) • 6RK73
over2years
Chameleon TFE3-translocation RCC and How Gene Partners Can Change Morphology: Accurate Diagnosis Using Contemporary Modalities. (PubMed, Adv Anat Pathol)
Herein we provided a comprehensive analysis of ∼400 tRCC cases with known TFE3 fusion partners, estimated their relative incidence and summarized clinicomorphologic features associated with most common fusion subtypes. Our data was based on an extensive literature review and had a special focus on comparing immunohistochemistry, fluorescent in situ hybridization and contemporary molecular studies for the accurate diagnosis of tRCC.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation • TFE3 fusion
over2years
ANZUP - Non-clear Cell Post Immunotherapy CABozantinib (UNICAB) (clinicaltrials.gov)
P2, N=48, Recruiting, Australian and New Zealand Urogenital and Prostate Cancer Trials Group | Trial primary completion date: Apr 2022 --> Oct 2022
Trial primary completion date
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
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Cabometyx (cabozantinib tablet)
almost3years
Renal cancer associated with Xp11.2 translocation/TFE3 gene fusion: Clinicopathological analysis of 13 cases. (PubMed, Ann Diagn Pathol)
This type of kidney cancer was a rare subtype. Because of its complex and changeable shape, it has a high degree of overlap with other kidney cancer subtypes, and the missed diagnosis rate and misdiagnosis rate are extremely high. The diagnosis is mainly based on pathomorphology and immunohistochemistry, TFE3 positive expression and TFE3 gene destruction and rearrangement.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • CA9 (Carbonic anhydrase 9)
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TFE3 translocation • TFE3 fusion
almost3years
Xp11.2 Translocation Renal Cell Carcinoma With TFE3 Rearrangement: Distinct Morphological Features and Prognosis With Different Fusion Partners. (PubMed, Front Oncol)
We identified a novel VCP-TFE3 fusion in Xp11.2 translocation RCCs for the first time, which has unique morphology and worse prognosis than those with other variant TFE3 rearrangements. Integration of morphological, immunohistochemical, and molecular methods is often necessary for the precise diagnosis and optimal clinical management of malignant tumors.
Journal
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TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation • TFE3 fusion
almost3years
Clinicopathological Analysis of 9 Cases of TFE3-rearranged Epithelioid Hemangioendothelioma to Further Broaden Its Morphological Spetrum (USCAP 2022)
TFE3-rearranged EHE is a rare and novel molecular subtype of vascular tumors. Compared with classic EHE, TFE3-rearranged EHE showed a broad morphological spectrum, including well-formed vascular spaces, solid nests and sheets of eosinophilic or clear epithelioid cells, spindle cell components and absence of obvious myxohyaline stroma. Familiar with the clinicopathological spetrum of TFE3-rearranged EHE and increasing of immunohistochemistry and molecular detection of TFE3 in the diagnosis of vascular tumors, will be helpful to identify this new molecular subtype.
Clinical
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YAP1 (Yes associated protein 1) • CD34 (CD34 molecule) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • CD31 (Platelet and endothelial cell adhesion molecule 1)
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CD31 expression • TFE3 translocation • TFE3 fusion
almost3years
Estradiol increases risk of topoisomerase IIβ-mediated DNA strand breaks to initiate Xp11.2 translocation renal cell carcinoma. (PubMed, Cell Commun Signal)
Our results indicate that E2 amplifies TOP2β-mediated TFE3 breaks by ERα-dependent pathway, and E2 upregulates TFE3 by NRF1 to increase the risk of TFE3 breaks. This suggests that E2 is an important pathogenic factor for Xp11.2 tRCC pathogenesis. Video Abstract.
Journal
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ER (Estrogen receptor) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • NRF1 (Nuclear Respiratory Factor 1)
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TFE3 translocation
3years
Integrated exome and RNA sequencing of TFE3-translocation renal cell carcinoma. (PubMed, Nat Commun)
In line with the aggressive nature, the high angiogenesis/stroma/proliferation cluster exclusively consists of tumors with ASPSCR1-TFE3 fusion. Here, we describe the genomic and transcriptomic features of TFE3-tRCC and provide insights into precision medicine for this disease.
Journal • PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • KRAS (KRAS proto-oncogene GTPase) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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PD-L1 expression • TFE3 translocation • TFE3 fusion
over3years
Key Renal Neoplasms With a Female Predominance. (PubMed, Adv Anat Pathol)
In contrast, tuberous sclerosis complex-related neoplasms often enter the differential for tumors with eosinophilic cytology. This review provides an overview of the clinical, gross, microscopic, immunohistochemical, genetic, and molecular alterations in key renal neoplasms occurring more commonly in females; differential diagnoses are also discussed regardless of sex predilection.
Journal
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mTOR (Mechanistic target of rapamycin kinase) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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TFE3 translocation
over3years
Tumors masquerading as type 2 papillary renal cell carcinoma: pathologists' ever-expanding differential diagnosis for a heterogeneous group of entities. (PubMed, Urol Oncol)
The differential diagnosis for T2PRCC includes a variety of other renal tumors, including aggressive entities such as TFE3 translocation-associated renal cell carcinoma, TFEB-amplified renal cell carcinoma, fumarate hydratase-deficient renal cell carcinoma, high-grade CCRCC, and collecting duct carcinoma. Accurate classification of these tumors is important for prognostication and selection of therapy.
Review • Journal
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FH (Fumarate Hydratase) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3) • TFEB (Transcription Factor EB 2)
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TFE3 translocation
over3years
Journal
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HIF1A (Hypoxia inducible factor 1, alpha subunit) • TFE3 (Transcription Factor Binding To IGHM Enhancer 3)
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HIF1A expression • TFE3 translocation • TFE3 fusion
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PX-478