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GENE:

SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)

i
Other names: SETD2, SET Domain Containing 2, Histone Lysine Methyltransferase, HIF-1, KMT3A, HYPB, Histone-Lysine N-Methyltransferase SETD2, Protein-Lysine N-Methyltransferase SETD2, Huntingtin-Interacting Protein B, Lysine N-Methyltransferase 3A, Huntingtin Yeast Partner B, SET Domain Containing 2, KIAA1732, P231HBP, HIP-1, SET2, Huntingtin Interacting Protein 1, Huntingtin-Interacting Protein 1, SET Domain-Containing Protein 2, FLJ23184, HSPC069, HBP231, SETD2, HSET2, HIF1, LLS
8d
Expanding the Molecular Landscape of Deep Penetrating Nevus-like Melanomas Beyond CTNNB1 and APC Mutations: A Clinicopathologic and Molecular Study of 14 Cases. (PubMed, Am J Surg Pathol)
After a median follow-up of 33.5 months, 36% of patients developed distant metastases, and 2 patients died of disease 8 and 32 months, respectively, after initial diagnosis. These findings expand the molecular diversity of DPN-like melanomas and provide valuable insights into their clinical outcomes.
Journal • Tumor mutational burden
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EGFR (Epidermal growth factor receptor) • BRAF (B-raf proto-oncogene) • TMB (Tumor Mutational Burden) • NRAS (Neuroblastoma RAS viral oncogene homolog) • ARID1A (AT-rich interaction domain 1A) • TERT (Telomerase Reverse Transcriptase) • CTNNB1 (Catenin (cadherin-associated protein), beta 1) • APC (APC Regulator Of WNT Signaling Pathway) • FAT1 (FAT atypical cadherin 1) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
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BRAF mutation
8d
Concurrent Tissue and Circulating Tumor DNA analysis in Renal Cell Carcinoma: Insights from a Multimodal Database. (PubMed, Oncologist)
ctDNA testing offers complementary insights to tissue NGS in RCC, particularly in metastatic disease, suggesting the potential utility of ctDNA in advanced RCC. Longitudinal analysis may enhance delineation of biomarkers of response and resistance at mutation and ctDNA fraction levels.
Journal • Circulating tumor DNA
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TP53 (Tumor protein P53) • PBRM1 (Polybromo 1) • BAP1 (BRCA1 Associated Protein 1) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
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Tempus xT Assay • Tempus xF Assay
9d
Site-specific methylation of SRSF2P95H by SETD2 inhibits MDSC-mediated proinflammatory niche formation in mouse models of myelodysplastic syndrome. (PubMed, Sci Transl Med)
Mechanistically, SETD2 methylates SRSF2P95H at lysine-17 and lysine-65 to inhibit aberrant splicing of CEACAM1-4 (isoforms of carcinoembryonic antigen cell adhesion molecule), which enhances interleukin-1β (IL-1β) signaling through Slc7a11 (solute carrier family 7 member 11)-mediated cystine uptake, thereby promoting HSPC differentiation into MDSCs, establishing an IL-1β-driven immunosuppressive microenvironment. These findings identify the SRSF2P95HK17me1K65me2-CEACAM1-4 signaling axis as a promising therapeutic target in SRSF2P95-Mut MDS.
Preclinical • Journal
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CEACAM5 (CEA Cell Adhesion Molecule 5) • SRSF2 (Serine and arginine rich splicing factor 2) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • SLC7A11 (Solute Carrier Family 7 Member 11) • CEACAM1 (CEA Cell Adhesion Molecule 1) • IL1B (Interleukin 1, beta)
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SRSF2 mutation
10d
The genetics of cancer heterogeneity and mesothelioma. (PubMed, Front Oncol)
In addition, germline mutations are present in a subset of patients with mesothelioma and primarily involve genes in the DNA repair and cell cycle regulation and are more common in patients who are young, with family history of mesothelioma, or with peritoneal mesothelioma. In this review, we discuss the considerable heterogeneity of mesothelioma, the diversity of radiologic and gross presentation, various morphologic features with distinctive histologies and ultimately, we individually describe subsets of tumors characterized by uncommon alterations such as germline mutations, genomic near-haploidization, ALK rearrangement, ATF1 rearrangement, or EWSR1::YY1 fusion, as well as the implications of these findings on the diagnostic workup.
Review • Journal
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ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • BAP1 (BRCA1 Associated Protein 1) • NF2 (Neurofibromin 2) • EWSR1 (EWS RNA Binding Protein 1) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • ATF1 (Activating Transcription Factor 1) • SETDB1 (SET Domain Bifurcated Histone Lysine Methyltransferase 1) • YY1 (YY1 Transcription Factor)
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TP53 mutation • ALK rearrangement • ALK fusion
10d
Multi-omics profiling links enhancer-associated MSH6 downregulation to platinum resistance, prognosis, and immune features in ovarian cancer. (PubMed, Gene)
This study identifies a proteomics-derived multi-omics signature associated with platinum resistance and prognosis in OC and highlights MSH6 as a candidate marker linked to chemoresistant and immune-related features. Further mechanistic and clinical validation is needed.
Journal • IO biomarker
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MSH6 (MutS homolog 6) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • ARAF (A-Raf Proto-Oncogene)
14d
Inactivation of BAP1 and the Hippo Pathway Characterizes the Genomic Alterations of Peritoneal Mesothelioma. (PubMed, Life (Basel))
This study presents data that can help draw conclusions on common mutations, mutual exclusivity patterns, and demographics at risk for peritoneal mesothelioma. Genomic analysis of peritoneal mesothelioma may inform possible intervention targets for therapeutic treatment.
Journal
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BAP1 (BRCA1 Associated Protein 1) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
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TP53 mutation
17d
CLOCK-catalyzed histone H3K37 glutarylation suppresses H3K36 trimethylation pathways in glioblastoma. (PubMed, Sci Adv)
This study expands the repertoire of histone modification and diversifies the mechanisms underlying CLOCK-implicated chromatin dynamics. It also unearths an undocumented mechanistic link between dysregulated circadian CLOCK and decreased H3K36me3 pathways in glioblastoma.
Journal
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SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
17d
SETD2 methyltransferase activity promotes correct transcription initiation and termination. (PubMed, EMBO Rep)
Additionally, alternative polyadenylation upon SETD2 activity loss is highly cell type specific, and no relationship with transcription readthrough was observed. We demonstrate that methyltransferase activity of SETD2 stimulates proper initiation, prevents cryptic initiation and promotes efficient 3' end processing, however, it does so indirectly.
Journal
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SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
17d
Histone methyltransferase SETD2 regulates TKT expression and mediates glycolysis to suppress lung adenocarcinoma progression and improve chemosensitivity. (PubMed, Am J Cancer Res)
Cisplatin (CIS)-resistant cells were established, and SETD2 and TKT expression levels were assessed via Western blot...Additionally, SETD2 overexpression suppressed tumor growth by down-regulating TKT, reduced glycolysis level in tumor tissues, promoted apoptosis and inhibited proliferation of tumor cells. In conclusion, SETD2 inhibits glycolysis by directly suppressing TKT transcription, thereby attenuating malignant progression and enhancing chemosensitivity in LUAD.
Journal
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SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
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cisplatin
22d
Genomic Profiling in Localized Prostate Cancer: Associations With Biochemical Recurrence and Response to Salvage Radiotherapy. (PubMed, Cancer Sci)
These findings suggest that somatic genomic alterations identified at prostatectomy are associated with early recurrence in localized PC. Further validation in independent cohorts is required to determine whether genomic profiling may contribute to future risk stratification and management strategies.
Journal • BRCA Biomarker
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BRCA2 (Breast cancer 2, early onset) • PTEN (Phosphatase and tensin homolog) • ERBB3 (V-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3) • POLD1 (DNA Polymerase Delta 1) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase)
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BRCA2 mutation
24d
Aberrant Kupffer-like differentiation of hematopoietic stem cell is critical for the MDS pathogenesis in Setd2-deficient mice. (PubMed, Cell Death Differ)
These findings suggest that the long-lived inflammatory cells may compensate for the HSC self-renewal defects, triggering systemic inflammation and driving hematopoietic malignant transformation. This paradigm provides a new understanding of hematopoietic malignancies with functional defects and exhaustion of HSCs.
Preclinical • Journal
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SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • IRF8 (Interferon Regulatory Factor 8)