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BIOMARKER:

NPM1-ALK fusion

i
Other names: Nucleophosmin (Nucleolar Phosphoprotein B23, Numatrin), Testicular Tissue Protein Li 128, Nucleolar Protein NO38, Numatrin, NPM1, Nucleophosmin 1, Nucleophosmin/Nucleoplasmin Family, Member 1, Nucleolar Phosphoprotein B23, NBLST3, CD246, Anaplastic Lymphoma Kinase, Anaplastic Lymphoma Kinase (Ki-1), CD246 Antigen, Mutant Anaplastic Lymphoma Kinase, ALK, ALK Receptor Tyrosine Kinase, Anaplastic Lymphoma Receptor Tyrosine Kinase, ALK Tyrosine Kinase Receptor
Entrez ID:
13d
Treatment-free remission after discontinuation of ALK tyrosine kinase inhibitors (TKIs) in patients with ALK-positive anaplastic large cell lymphoma (ALCL) (AACR 2023)
Out data demonstrated that treatment-free remission was durable for more than two years in ALK-positive ALCL patients following the cessation of ALK TKIs. MRD-guideddiscontinuation decision may be considered for ALK-positive ALCL patients treated with ALK inhibitors who had undetectable MRD.Table 1. Summary of patient characteristics and outcomes of ALK TKI discontinuationNo.SexAge at diagnosisAnn Arbor stageALK TKILines of prior therapyTreatment duration of ALK TKI (months)Reason for cessationDuration of ALK TKI cessation (months)Best response to ALK TKITime of MRD assessment after TKI cessationMRD after TKI cessation1M22IIBCrizotinib393.9Fertility27.8CR5.6Negative2F20IVBCrizotinib190.9Fertility25.9CR0.0Negative3M23IVCeritinib142.7Adverse event61.9CR61.9Negative4F58IVCrizotinib31.7Cost86.6CR72.1Negative5F64IVBCrizotinib113.6Cost31.0CR14.4Negative6M75IVCrizotinib211.7Cost80.2CR62.0Negative
Clinical
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ALK (Anaplastic lymphoma kinase) • NPM1 (Nucleophosmin 1) • E2F2 (E2F Transcription Factor 2)
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ALK positive • ALK fusion • NPM1-ALK fusion • NPM-ALK fusion
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Xalkori (crizotinib) • Zykadia (ceritinib)
13d
Long-read sequencing of pediatric cancer genomes identifies multiple clinically relevant variants (AACR 2023)
The difference in 5mC modification probability between the two alleles of the known imprinted genes was 81.5. Our results demonstrate that lrSeq can detect multiple CRGAs across several different types of genetic variants and pediatric cancers, bringing us closer to the promise of an all-in-one genetic test for cancer characterization.
Clinical
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ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • NTRK2 (Neurotrophic tyrosine kinase, receptor, type 2) • NPM1 (Nucleophosmin 1) • CDKN2A (Cyclin-dependent kinase inhibitor 2A) • NOTCH1 (Notch 1) • KMT2A (Lysine Methyltransferase 2A) • CEBPA (CCAAT Enhancer Binding Protein Alpha)
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TP53 mutation • NTRK2 fusion • ALK fusion • CDKN2A deletion • KMT2A rearrangement • MLL rearrangement • NPM1-ALK fusion
5ms
The ALK-OBS Trial: Results of a Multicenter Prospective Study Assessing the Prognostic Value of New Markers in Adults with ALK-Positive ALCL Treated By CHOEP: A Lysa Study (ASH 2022)
In all, 36 pts (92%) received the planned 6 cycles of treatment, and 34 pts (87%) received all cycles of etoposide...MRD1 identified a high-risk group, for which specific approaches may be needed. CHOEP was overall well tolerated and induced high rates of PFS and OS.
Clinical
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ALK (Anaplastic lymphoma kinase) • NPM1 (Nucleophosmin 1) • TNFRSF8 (TNF Receptor Superfamily Member 8)
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ALK positive • ALK fusion • TNFRSF8 expression • ALK translocation • NPM1-ALK fusion
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etoposide IV
11ms
Primary Central Nervous System Anaplastic Large Cell Lymphoma, ALK Positive. (PubMed, Am J Clin Pathol)
We present the largest case series to date of a rare primary CNS lymphoma with additional diagnostic and clinical information.
Journal
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ALK (Anaplastic lymphoma kinase) • NPM1 (Nucleophosmin 1)
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ALK positive • ALK rearrangement • ALK fusion • NPM1-ALK fusion
1year
Preclinical activity of NVL-655 in ALK-driven cancer models beyond non-small cell lung cancer (AACR 2022)
TRKB inhibition in the central nervous system has been implicated in adverse events observed with FDA-approved ALK inhibitor lorlatinib. In cell-based assays, NVL-655 was observed to inhibit proliferation of a human anaplastic large cell lymphoma cell line harboring NPM1-ALK fusion and human neuroblastoma cell lines harboring ALK activating mutations or amplification. In conclusion, the preclinical profile of NVL-655 supports its potential to address a medical need for patients with ALK-driven disease in both NSCLC and other cancers such as anaplastic large cell lymphoma and neuroblastoma.
Preclinical
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ALK (Anaplastic lymphoma kinase) • NPM1 (Nucleophosmin 1)
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ALK fusion • ALK mutation • NPM1-ALK fusion • ALK I1171
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Lorbrena (lorlatinib) • NVL-655
over1year
Precision therapy with anaplastic lymphoma kinase inhibitor ceritinib in ALK-rearranged anaplastic large cell lymphoma. (PubMed, ESMO Open)
This ceritinib translational study in NPM1-ALK+ ALCL provides a strong rationale for a prospective study of ceritinib in ALK+ T-cell lymphomas and other ALK+ hematologic malignancies.
Journal
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ALK (Anaplastic lymphoma kinase) • NPM1 (Nucleophosmin 1) • STAT3 (Signal Transducer And Activator Of Transcription 3)
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ALK positive • ALK rearrangement • ALK fusion • ALK translocation • NPM1-ALK fusion
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Zykadia (ceritinib)
2years
Preclinical evaluation of gilteritinib on NPM1-ALK driven Anaplastic Large Cell Lymphoma Cells. (PubMed, Mol Cancer Res)
In summary, our preclinical studies explored the novel therapeutic potential of gilteritinib in the treatment of ALCL cells expressing NPM1-ALK and potentially in other ALK or ALK-fusion driven hematologic or solid malignancies. Implications: Our preclinical results explore the use of gilteritinib for the treatment of NPM1-ALK driven anaplastic large cell lymphoma cells and pave a path for developing future clinical trials.
Preclinical • Journal • PARP Biomarker
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ALK (Anaplastic lymphoma kinase) • MYC (V-myc avian myelocytomatosis viral oncogene homolog) • NPM1 (Nucleophosmin 1) • MCL1 (Myeloid cell leukemia 1) • TNFRSF8 (TNF Receptor Superfamily Member 8) • BIRC5 (Baculoviral IAP repeat containing 5) • CASP3 (Caspase 3) • CASP9 (Caspase 9)
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ALK positive • ALK fusion • TNFRSF8 expression • ALK translocation • MCL1 expression • NPM1-ALK fusion • BIRC5 expression
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Xospata (gilteritinib)
over2years
Minimal residual disease monitoring using a 3'ALK universal probe assay in ALK-positive anaplastic large cell lymphoma: ddPCR, an attractive alternative method to real-time quantitative PCR. (PubMed, J Mol Diagn)
A major benefit of digital droplet PCR is a reduced experimental set-up compared with quantitative PCR, without generation of standard curves, leading to a reliable protocol for multilaboratory validation, in multicenter clinical trials essential for this rare pathology. Our ALK universal method could be used for the screening of ALK fusion transcripts in liquid biopsy of other ALK positive tumors, including non-small cell lung carcinomas.
Journal
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ALK (Anaplastic lymphoma kinase) • EML4 (EMAP Like 4) • NPM1 (Nucleophosmin 1) • TPM3 (Tropomyosin 3)
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ALK positive • ALK fusion • ALK translocation • NPM1-ALK fusion
over2years
Clinical, Histologic, and Molecular Characteristics of Anaplastic Lymphoma Kinase-positive Primary Cutaneous Anaplastic Large Cell Lymphoma. (PubMed, Am J Surg Pathol)
Immunohistochemically, 3 cases (50%) showed combined nuclear and cytoplasmic ALK expression with underlying NPM1-ALK fusions, while 3 cases (50%) showed solely cytoplasmic ALK expression with variant ALK fusion partners (TRAF1, ATIC, TPM3). ALK-positive C-ALCL is extremely uncommon, has a comparable favorable prognosis to ALK-negative C-ALCL, and should be treated in the same way with radiotherapy as first-line treatment.
Clinical • Journal
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ALK (Anaplastic lymphoma kinase) • NPM1 (Nucleophosmin 1) • TPM3 (Tropomyosin 3)
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ALK positive • ALK fusion • ALK translocation • ALK negative • NPM1-ALK fusion
over2years
[VIRTUAL] Pathology and Pathogenesis of T-Cell Lymphoma (SOHO 2020)
Recognizing this unique process is important as mimics NK/T cell lymphoma and can result in erroneous diagnosis, leading to aggressive chemotherapy. The etiology of this process is unknown.
PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • CD20 (Membrane Spanning 4-Domains A1) • CD8 (cluster of differentiation 8) • TNFRSF8 (TNF Receptor Superfamily Member 8) • TET2 (Tet Methylcytosine Dioxygenase 2) • JAK3 (Janus Kinase 3) • ALK1 (Activin A Receptor Like Type 1) • STAT5B (Signal Transducer And Activator Of Transcription 5B) • NCAM1 (Neural cell adhesion molecule 1) • SYK (Spleen tyrosine kinase) • TBX21 (T-Box Transcription Factor 21) • TYK2 (Tyrosine Kinase 2) • IRF4 (Interferon regulatory factor 4) • SH2B3 (SH2B Adaptor Protein 3) • GATA3 (GATA binding protein 3) • TCL1A (TCL1 Family AKT Coactivator A) • TP63 (Tumor protein 63)
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PD-L1 expression • TP53 mutation • IDH2 mutation • ALK positive • DNMT3A mutation • ALK fusion • TET2 mutation • TNFRSF8 positive • TNFRSF8 expression • ALK translocation • ALK negative • NPM1-ALK fusion • STAT3 mutation • JAK3 mutation • TP53 mutation + ALK positive • IDH2 R172