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BIOMARKER:

MLL-PTD

i
Other names: HTRX1, HTRX, MLL1A, Mixed Lineage Leukemia 1, Myeloid/Lymphoid Or Mixed-Lineage Leukemia Protein 1, CXXC7, MLL1, TRX1, Zinc Finger Protein HRX, Trithorax-Like Protein, ALL-1, Lysine (K)-Specific Methyltransferase 2A, CXXC-Type Zinc Finger Protein 7, Histone-Lysine N-Methyltransferase 2A, Myeloid/Lymphoid Or Mixed-Lineage Leukemia, Lysine Methyltransferase 2A, MLL, Myeloid/Lymphoid Or Mixed-Lineage Leukemia, KMT2A
1year
Clinical
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KMT2A (Lysine Methyltransferase 2A)
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KMT2A-PTD • MLL fusion • MLL-PTD
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Oncomine Myeloid Assay GX
1year
Validation of the Molecular International Prognostic Scoring System (IPSS-M) in Patients (Pts) with Myelodysplastic Syndromes/Neoplasms (MDS) Who Underwent Allogenic Stem Cell Transplantation (HSCT) (ASH 2023)
Overall, 74% of pts received HMA monotherapy (27% decitabine; 73% azacitidine), while 26% received HMA in a combined therapy. Conclusions To our knowledge, this is the largest reported cohort in which IPSS-M performance was evaluated among pts with HMA-treated MDS and subsequently underwent HSCT. While the IPSS-M subgroups showed significant OS differences, the IPSS-M did not seem to substantially improve prediction when compared to the IPSS-R.
Clinical
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TP53 (Tumor protein P53) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • ASXL1 (ASXL Transcriptional Regulator 1) • SRSF2 (Serine and arginine rich splicing factor 2) • STAG2 (Stromal Antigen 2)
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TP53 mutation • ASXL1 mutation • SRSF2 mutation • STAG2 mutation • MLL-PTD
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azacitidine • decitabine
1year
Enhancing Myeloid Cancer Genomic Profiling through Comprehensive Whole Genome Sequencing Using the Isabl Gxt Heme Analytical Platform (ASH 2023)
Isabl GxT Heme represents a myeloid cancer profiling solution that reports all clinically relevant biomarkers in AML and MDS inclusive of TP53 allelic state, MLL PTD, disease defining and risk stratifying biomarkers across mutation types. Isabl GxT Heme had comparable sensitivity to the reference test and additionally detected myeloid-relevant driver events in 27% of patients. This work demonstrates the validity and added benefit of Isabl GxT Heme in characterizing myeloid cancers.
Whole genome sequencing
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TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3) • KMT2A (Lysine Methyltransferase 2A)
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MLL-PTD
1year
Covalent Menin Inhibitor Bmf-219 in Patients with Relapsed or Refractory (R/R) Acute Leukemia (AL): Preliminary Phase 1 Data from the Covalent-101 Study (ASH 2023)
Patient B: 70/F, NPM1m, ECOG=1, 125 mg QD, Arm B, 1 prior line of treatment with decitabine and an investigational agent. BMF-219 is generally well tolerated with no DLT observed (and able to be taken with and without CYP3A4 inhibitors) with no pts discontinuing therapy due to toxicity. BMF-219 dose escalation is ongoing and approaching target exposure. BMF-219 demonstrates early signs of clinical activity in different genomic subgroups.
Clinical • P1 data
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NPM1 (Nucleophosmin 1) • KMT2A (Lysine Methyltransferase 2A) • NUP98 (Nucleoporin 98 And 96 Precursor 2) • CEBPA (CCAAT Enhancer Binding Protein Alpha) • NSD1 (Nuclear Receptor Binding SET Domain Protein 1) • SETBP1 (SET Binding Protein 1) • NUP214 (Nucleoporin 214)
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MLL mutation • KMT2A-PTD • MLL-PTD
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decitabine • icovamenib (BMF-219)
1year
In Vivo Antileukemic Activity of Ost-01 in Acute Myeloid Leukemia (AML): A Novel Natural Product (NP) from Baccharis Coridifolia (ASH 2023)
Compared with OST-01 alone or V, combination of OST-01 and the BCL-2 inhibitor, venetoclax (VEN) demonstrated a synergistic activity on AML cell lines and primary blasts (max synergy score: 28.16), and prolonged survival of MllPTD/WT/Flt3ITD/ITD AML mice (VEN/OST vs OST and VEN, median: 156 vs 123 and 95 days, p=0.0003 and p<0.0001; secondary transplant median: 105 vs 58 and 31 days, p<0.0001 and p<0.0001, respectively) and CM AML mice (VEN/OST vs OST and VEN, median: 85 vs 70 and 58 days, p=0.0005 and p<0.0001; secondary transplant median: 95 vs 62.5 and 48 days, p=0.0003 and p<0.0001, respectively). To date, no preclinical toxicity has been observed. We concluded that OST-01 is a non-toxic, potentially new therapy for AML; translation from the bench to the bedside is underway.
Preclinical • IO biomarker
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FLT3 (Fms-related tyrosine kinase 3) • NPM1 (Nucleophosmin 1) • ERBB3 (V-erb-b2 avian erythroblastic leukemia viral oncogene homolog 3) • CD38 (CD38 Molecule) • CD34 (CD34 molecule) • NCL (Nucleolin)
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FLT3 expression • FLT3-ITD expression • MLL-PTD
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Venclexta (venetoclax)
1year
Conserved and Unique Regulatory Mechanisms of RUNX1 in Hematopoietic Stem/Progenitor Cell Subpopulations in Both Normal Hematopoiesis and FPD/AML Development (ASH 2023)
We used two complementary mouse models: a conditional RUNX1 knockout mouse, i,e, Mx-Cre; Runx1flox/flox, and a tetracycline-inducible FPD/AML patient derived RUNX1 S291fsX300 mutation knock-in crossed to a MLL-PTD knock-in mouse, i.e. MLL-PTD; RUNX1 S291fsX300..."Correction" of the RUNX1S291fsX300 mutation by doxycycline withdraw reversed the FPD phenotype as well as the cellular distribution changes in HSCs, GMPs and MEPs...RUNX1 plays a universal role in the systemic developmental program of various HSPC subpopulations but appears to engage in unique lineage specific factors to deliver subpopulation-specific functions such as mega-K cell fate-priming of HSCs, inflammatory program in GMPs, and bone marrow location signals in MEPs. Ongoing analyses of the FPD/AML mouse genomic data in this context are expected to reveal contributions of patient RUNX1 mutations to the disease development.
Clinical
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FLT3 (Fms-related tyrosine kinase 3) • NOTCH1 (Notch 1) • RUNX1 (RUNX Family Transcription Factor 1) • CXCL10 (Chemokine (C-X-C motif) ligand 10) • CD34 (CD34 molecule) • CXCL12 (C-X-C Motif Chemokine Ligand 12) • ALDH1A1 (Aldehyde Dehydrogenase 1 Family Member A1) • IRF4 (Interferon regulatory factor 4) • ETS1 (ETS Proto-Oncogene 1) • PDGFB (Platelet Derived Growth Factor Subunit B) • TNFRSF11A (TNF Receptor Superfamily Member 11a) • TNFSF4 (TNF Superfamily Member 4) • FUT7 (Fucosyltransferase 7) • ITGA2B (Integrin Subunit Alpha 2b)
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RUNX1 mutation • MLL mutation • MLL-PTD
over1year
Deletion of CD36 exhibits limited impact on normal hematopoiesis and the leukemia microenvironment. (PubMed, Cell Mol Biol Lett)
Although the loss of Cd36 affects the hematopoietic stem cell and erythropoiesis, limited detrimental overall impact was observed on normal Hematopoietic and leukemic microenvironments. Altogether, considering the limited impact on normal hematopoiesis, therapeutic approaches to target CD36 in cancer are unlikely to result in toxicity to normal blood cells.
Journal
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FLT3 (Fms-related tyrosine kinase 3) • CD8 (cluster of differentiation 8) • CD36 (thrombospondin receptor) • LYN (LYN Proto-Oncogene Src Family Tyrosine Kinase)
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MLL-PTD
over1year
FEATURES AND TREATMENT OF PATIENTS WITH T(8;14)(Q24;Q11) / TCRA/D::MYC TRANSLOCATED T ACUTE LYMPHOBLASTIC LEUKEMIA/LYMPHOMA (T-ALL/LBL) (EHA 2023)
The prognosis of the patients with t(8; 14) / TCRA/D::MYC-translocated T-ALL/LBL was very poor, we should pay enough attention to it. while CD7 CAR-T allows patients to achieve short-term CR. Allo-HSCT after CAR-T therapy should be considered for long survival.
Clinical • IO biomarker
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TP53 (Tumor protein P53) • PTEN (Phosphatase and tensin homolog) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • NOTCH1 (Notch 1) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • CCND3 (Cyclin D3) • CD7 (CD7 Molecule)
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TP53 mutation • PTEN mutation • CDKN2A deletion • CDKN2A mutation • MLL-PTD
almost2years
Addition of venetoclax to myeloablative conditioning regimens for allogeneic hematopoietic stem cell transplantation in high-risk AML. (PubMed, Ann Med)
The 600-day relapse incidence (RI) and non-relapse mortality (NRM) was 6.9% (95%CI, 1.8-26.3%) and 11.7% (95%CI, 3.9-35.0%). Our study shows that the addition of venetoclax to a MAC allo-HSCT was feasible, safe and effective for high-risk AML patients.
Journal
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FLT3 (Fms-related tyrosine kinase 3) • KMT2A (Lysine Methyltransferase 2A) • NUP98 (Nucleoporin 98 And 96 Precursor 2)
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FLT3-ITD mutation • MLL rearrangement • MLL rearrangement • MLL-PTD
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Venclexta (venetoclax)
2years
Prognostic value and outcome for acute lymphocytic leukemia in children with MLL rearrangement: a case-control study. (PubMed, BMC Cancer)
Patients with MLL-r positive ALL have moderate remission rates, but are prone to relapse with low overall survival. The outcome of MLL-r positive ALL was closely related to the partner genes, and clinical attention should be paid to screening for MLL partner genes and combining them with other prognostic factors for accurate risk stratification.
Journal
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KMT2A (Lysine Methyltransferase 2A)
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MLL rearrangement • MLL rearrangement • MLL-PTD
2years
Loss of Cd36 Expression Has Limited Impact on Mouse Normal Hematopoiesis (ASH 2022)
Cd36 KO mice exhibited similar leukemia engraftment in the BM (88.92% vs 86.38%, P = 0.0497), spleen (76.48% vs 68.10%, P = 0.1627), liver (16.12% vs 6.70%, P = 0.2521), and blood (16.33% vs 0.96%, P = 0.2504) compared with the WT group. Altogether, our preliminary data suggest that Cd36-KO has limited impact on normal hematopoietic cells.
Preclinical
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FLT3 (Fms-related tyrosine kinase 3) • CD8 (cluster of differentiation 8) • IL2RA (Interleukin 2 receptor, alpha) • CD36 (thrombospondin receptor) • CD4 (CD4 Molecule) • IL2 (Interleukin 2) • LYN (LYN Proto-Oncogene Src Family Tyrosine Kinase)
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MLL-PTD
2years
Impact of the Updated IPSS-Molecular Prognostic Scoring System for Myelodysplastic Syndrome in 10,283 Real World Samples (ASH 2022)
Conclusion A large proportion (50.1%, 2257/4437) of MDS patients analyzed have molecular findings that allow for further clinical risk stratification. These findings show the benefit of targeting a broad panel of genes using NGS for MDS prognosis and patient risk stratification.
Clinical • Real-world evidence
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TP53 (Tumor protein P53) • DNMT3A (DNA methyltransferase 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • KMT2A (Lysine Methyltransferase 2A) • SRSF2 (Serine and arginine rich splicing factor 2)
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TP53 mutation • MLL-PTD
2years
IPSS-M Applicability and Clinical Impact in Decision-Making Process in Real-Life Clinical Practice (ASH 2022)
According to our cohort of MDS patients, the proportion of cases who might benefit from the re-stratification according to the IPSS-M, in terms of potential differences in clinical management, is lower than initially expected. In spite of that, information derived from the NGS molecular should be the basis for different treatment approaches in the future. FIGURE LEGENDS: Figure 1.
Clinical
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PPM1D (Protein Phosphatase Mg2+/Mn2+ Dependent 1D) • ETNK1 (Ethanolamine Kinase 1) • BCORL1 (BCL6 Corepressor Like 1)
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MLL-PTD
2years
A Phase 1/2 Dose Escalation Study of the Myeloid Kinase Inhibitor HM43239 in Patients with Relapsed or Refractory Acute Myeloid Leukemia (ASH 2022)
In a preclinical xenograft and orthotopic model of AML, HM43239 exhibited greater antitumor potency than FLT3 inhibitor gilteritinib, SYK inhibitor entospletinib, BCL-2 inhibitor venetoclax, and demethylation agent azacitidine. As of July 14, 2022, HM43239 has delivered CRc at 80 mg, 120mg and 160 mg, and was well tolerated at these dose levels over multiple cycles with no DLTs or drug-related SAEs. Pharmacokinetic data illustrate increasing drug exposures through 120 mg and observed objective responses through 160 mg in both FLT3-WT and FLT3-mutated R/R AML patients even after gilteritinib and midostaurin treatment. An update of this study, including a planned single agent and venetoclax combination expansion, will be presented at the meeting.
Clinical • P1/2 data • IO biomarker
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KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • KIT (KIT proto-oncogene, receptor tyrosine kinase) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • JAK2 (Janus kinase 2) • RUNX1 (RUNX Family Transcription Factor 1) • PTPN11 (Protein Tyrosine Phosphatase Non-Receptor Type 11) • JAK1 (Janus Kinase 1) • SYK (Spleen tyrosine kinase)
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TP53 mutation • KRAS mutation • NRAS mutation • FLT3-ITD mutation • IDH2 mutation • FLT3 mutation • NPM1 mutation • DNMT3A mutation • MLL mutation • SYK mutation • MLL-PTD
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Venclexta (venetoclax) • Xospata (gilteritinib) • azacitidine • Rydapt (midostaurin) • entospletinib (GS-9973) • tuspetinib (HM43239)
2years
Disease Characteristics and International Prognostic Scoring Systems (IPSS, IPSS-R, IPSS-M) in Adult Patients with Higher-Risk Myelodysplastic Syndromes (MDS) Participating in Two Randomized, Double-Blind, Placebo-Controlled Studies with Intravenous Sabatolimab Added to Hypomethylating Agents (HMA) (STIMULUS-MDS1 and MDS2) (ASH 2022)
Pts were randomized 1:1 to sabatolimab+HMA (azacitidine [AZA] or decitabine) or placebo+HMA in MDS1, and to sabatolimab+AZA or placebo+AZA in MDS2. Pts in MDS1 had poorer prognosis features (baseline blasts, cytogenetics and higher IPSS-R) compared with MDS2 study. This preliminary analysis is among the first in large, well-controlled trials to assess IPSS-M and shows higher-risk categories compared with IPSS-R. Until molecular testing is routine globally, pt selection for clinical trials is still dependent on IPSS-R.
Clinical • IO biomarker
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TP53 (Tumor protein P53) • DNMT3A (DNA methyltransferase 1) • NF1 (Neurofibromin 1) • RUNX1 (RUNX Family Transcription Factor 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • HAVCR2 (Hepatitis A Virus Cellular Receptor 2) • PPM1D (Protein Phosphatase Mg2+/Mn2+ Dependent 1D) • BCORL1 (BCL6 Corepressor Like 1)
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TP53 mutation • DNMT3A mutation • ASXL1 mutation • MLL-PTD
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azacitidine • decitabine • sabatolimab (MBG453)
2years
Real-World Validation of Molecular International Prognostic Scoring System (IPSS-M) for Myelodysplastic Syndromes (ASH 2022)
Additional factors other than gene mutations can be involved in determining HMA sensitivity. The definition of a minimum set of relevant genes may facilitate the clinical implementation of the score.
Clinical • Real-world evidence
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FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • ETV6 (ETS Variant Transcription Factor 6) • SRSF2 (Serine and arginine rich splicing factor 2) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1)
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CBL mutation • U2AF1 mutation • MLL-PTD
almost3years
Monitoring of post-transplant MLL-PTD as minimal residual disease can predict relapse after allogeneic HSCT in patients with acute myeloid leukemia and myelodysplastic syndrome. (PubMed, BMC Cancer)
Our study indicated that MLL-PTD had a certain stability and could effectively reflect the change of tumor burden. The expression level of MLL-PTD after transplantation can serve as an effective indicator for predicting relapse.
Clinical • Retrospective data • Journal • Minimal residual disease
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KMT2A (Lysine Methyltransferase 2A)
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KMT2A expression • MLL-PTD
3years
Acute Myeloid Leukemia Cell-Intrinsic PD-1 Functions Promoting Leukemia Development By Recruiting SHP2 (ASH 2021)
In conclusion, we showed here that a subpopulation of murine and human AML blasts expresses high levels of PD-1 which mediated disease initiation and growth through activation of the MAPK/ERK signaling pathways. PD-1 blocking antibody reversed these activities and might contribute to the clinical efficacy of anti-PD-1 therapy in AML.
PD(L)-1 Biomarker • IO biomarker
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FLT3 (Fms-related tyrosine kinase 3) • CD34 (CD34 molecule) • PTPRC (Protein Tyrosine Phosphatase Receptor Type C)
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PD-L1 expression • PD-L1 overexpression • MLL-PTD
3years
Distinct clinico-biological features in AML patients with low allelic ratio FLT3-ITD: role of allogeneic stem cell transplantation in first remission. (PubMed, Bone Marrow Transplant)
In conclusion, FLT3-ITD is associated with different mutational and transcriptomic profiles compared with FLT3-ITD. The presence of concomitant poor-risk mutations exert negative prognostic impacts in patients with FLT3-ITD, who markedly benefit from allo-HSCT in CR1.
Clinical • Journal
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FLT3 (Fms-related tyrosine kinase 3) • CEBPA (CCAAT Enhancer Binding Protein Alpha)
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FLT3-ITD mutation • CEBPA mutation • MLL-PTD
over3years
Clinical • Journal
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WT1 (WT1 Transcription Factor) • CD36 (thrombospondin receptor) • CDKN1A (Cyclin-dependent kinase inhibitor 1A) • PROCR (Protein C Receptor)
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MLL-PTD
over3years
[VIRTUAL] SORAFENIB IN COMBINATION WITH INTENSIVE CHEMOTHERAPY FOR RELAPSED OR REFRACTORY FLT3-ITD POSITIVE ACUTE MYELOID LEUKEMIA: A SINGLE-INSTITUTION EXPERIENCE (EHA 2021)
New selective and strong inhibitors, including the recently approved gilteritinib, are rapidly changing the treatment paradigm, being able to induce remission in a significant proportion of pts with limited toxicities...In case of refractoriness to induction or relapse, patients were treated with fludarabine and high-dose cytarabine-based chemotherapy plus sorafenib, at the dose of 400 mg BID for 14 days continuously after the end of CHT...Toxicities were not negligible, but in line with those expected after intensive CHT in this population. The potential benefit of combining FLT3 inhibitors with intensive chemotherapy should be further explored in this setting for fit patients, and this strategy is currently under investigation in clinical trials testing new FLT3 inhibitors.
Clinical • Combination therapy
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FLT3 (Fms-related tyrosine kinase 3) • IDH1 (Isocitrate dehydrogenase (NADP(+)) 1) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1)
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FLT3 mutation • NPM1 mutation • MLL-PTD
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sorafenib • cytarabine • Xospata (gilteritinib) • fludarabine IV
5years
Azacytidine and Lymphocytes in Relapse of AML or MDS After Allogeneic Stem Cell Transplantation. (clinicaltrials.gov)
P2, N=50, Completed, Carlos Graux, MD, PhD | Active, not recruiting --> Completed | Trial completion date: Aug 2020 --> Nov 2019
Clinical • Trial completion • Trial completion date
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NPM1 (Nucleophosmin 1) • WT1 (WT1 Transcription Factor) • HLA-DRB1 (Major Histocompatibility Complex, Class II, DR Beta 1) • CEBPA (CCAAT Enhancer Binding Protein Alpha)
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MLL-PTD
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azacitidine • hydroxyurea