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GENE:

MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase)

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Other names: MBD4, Methyl-CpG Binding Domain 4, DNA Glycosylase, Methyl-CpG-Binding Domain Protein 4, Mismatch-Specific DNA N-Glycosylase, Methyl-CpG Binding Domain Protein 4, Methyl-CpG-Binding Endonuclease 1, Methyl-CpG-Binding Protein MBD4, MED1, G/5-Fluorouracil Mismatch Glycosylase With Biphasic Kinetics, Putative Methyl-CpG Binding Protein, 3,N(4)-Ethenocytosine Glycosylase, G/T Mismatch Glycosylase, G/U Mismatch Glycosylase
12d
Rare Germline Variants in CDKN2A-Negative Children and Adolescents With Cutaneous Melanoma. (PubMed, Pigment Cell Melanoma Res)
Two patients carried mutations in MBD4, suggesting it may contribute to early-onset disease. The high frequency of rare variants in high- or intermediate-risk genes highlights the importance of including such genes in genetic tests, as they may have implications for future risk in the adolescent patients and their at-risk relatives.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase)
24d
Ensemble Machine Learning on Bulk RNA-Seq Identifies 17-Gene Signature Predicting Neoadjuvant Chemotherapy Response in Breast Cancer. (PubMed, Curr Issues Mol Biol)
Pathway enrichment revealed associations with cell cycle regulation (E2F3, MKI67), DNA repair (BRCA2), and transcriptional control (MED1), with six priority genes (MED1, BRCA2, E2F3, PITPNB, H1-1, and FARP2) showing established breast cancer relevance. This externally validated 17-gene signature provides a biologically grounded tool for NAC response prediction in precision oncology.
Journal • Gene Signature • BRCA Biomarker
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BRCA2 (Breast cancer 2, early onset) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • E2F3 (E2F transcription factor 3)
1m
Study on epigenetic regulatory mechanism of MBD4 with a germline loss-of-function mutation (rs140693) responsible for retinoblastoma chemoresistance via the cell cycle and apoptotic pathways. (PubMed, Pharmacol Res)
MBD4 downregulation significantly impaired carboplatin or etoposide efficacy in vitro and in vivo, respectively. In the present study, our findings indicate that depletion or mutation of MBD4 interferes with the activation of the cell cycle and apoptosis via epigenetic regulation, thereby reducing drug susceptibility. It provides new insights into the role in RB chemoresistance of MBD4 as an epigenetic regulator, which might fuel the development of new RB-targeted strategies.
Journal
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FADD (Fas associated via death domain) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • CDKN1A (Cyclin-dependent kinase inhibitor 1A) • USP7 (Ubiquitin Specific Peptidase 7)
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carboplatin • etoposide IV
2ms
A tale of two mechanisms: Clarification of the pathway for MBD4 catalyzed glycosidic bond cleavage using MD and QM/MM calculations. (PubMed, DNA Repair (Amst))
This important function has resulted in MBD4 being implicated in various human health disorders including MBD4-associated neoplasia syndrome and cancer resistance to 5-fluorouracil treatment...This proposal is fully consistent with experimental crystallographic, mutagenic, stereoscopic, and kinetic data, and aligns the MBD4 catalytic pathway with that characterized for several other monofunctional DNA glycosylases. By furthering our knowledge of MBD4 catalysis, this work will aid in the future development of treatments for MBD4-related genetic disorders and the rational design of transition state mimic inhibitors to enhance existing cancer therapies.
Journal
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MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase)
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5-fluorouracil
3ms
Silver and polystyrene nanoparticles activate oestrogen signalling via cytoplasmic oestrogen receptor. (PubMed, Sci Rep)
The observed effect was ESR1-dependent and effectively blocked by tamoxifen, revealing a ligand-independent activation mechanism...The presence of PSNPs also mitigated AgNPs-induced reduction of BRCA1 expression. This study highlights how nanomaterial-induced ESR1 activation can lead to enhanced epithelial-mesenchymal transition and cell cycle progression, suggesting potential adverse effects of nanomaterials in ER+ cancer proliferation via protein kinase-mediated ESR1 modulation.
Journal • BRCA Biomarker
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ER (Estrogen receptor) • BRCA1 (Breast cancer 1, early onset) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • NCOR1 (Nuclear Receptor Corepressor 1) • CITED2 (Cbp/P300 Interacting Transactivator With Glu/Asp Rich Carboxy-Terminal Domain 2)
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ER positive
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tamoxifen
3ms
MED1-driven ecDNA super-enhancers in cancer. (PubMed, Cancer Cell)
In this issue of Cancer Cell, Wei et al. uncover MED1-driven ecDNA super-enhancers as regulatory hubs and show that disrupting ecDNA-containing condensates selectively impairs transcription and induces apoptosis in a cancer-type-specific manner.
Journal
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MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase)
4ms
The genetic puzzle of FAP: exploring novel diagnostic approaches for APC/MUTYH-negative case. (PubMed, Hered Cancer Clin Pract)
A second strong predisposition to CRC is MAP, characterized by biallelic pathogenic variants in the MUTYH gene, with a phenotype similar to FAP. This mini review focuses on potential approaches to improve the diagnosis of patients in whom pathogenic variants in the APC and MUTYH genes are not detected by routine testing.
Review • Journal
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PTEN (Phosphatase and tensin homolog) • APC (APC Regulator Of WNT Signaling Pathway) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • MUTYH (MutY homolog)
4ms
SEA version 4.0: a major expansion and update of the Super-Enhancer Archive. (PubMed, Nucleic Acids Res)
The performance interaction and visualization of SEA version 4.0 enable genomic and cross-species comparisons, revealing complex genomic interactions and becoming an indispensable resource for decoding the mechanisms of SE in development and disease. Access freely at http://sea4.edbc.org.
Journal
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MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • BRD4 (Bromodomain Containing 4)
4ms
MED1 IDR deacetylation controls stress responsive genes through RNA Pol II recruitment. (PubMed, Nat Chem Biol)
Functionally, ER+ BC cells with deacetylated MED1 exhibit faster growth and enhanced stress resistance in culture and in an orthotopic mouse model. These findings advance our understanding of Pol II regulation under cellular stress and potentially suggest therapeutic strategies targeting oncogenic transcription driven by MED1 and Mediator.
Journal
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ER (Estrogen receptor) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • SIRT1 (Sirtuin 1)
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ER positive
4ms
Targeting CDK12 disrupts estrogen-receptor chromatin recruitment and ER-MED1 transcription in advanced ER+ breast cancer. (PubMed, J Natl Cancer Inst)
This work describes a novel mechanism for CDK12, suggesting a potential vulnerability in ER+ breast cancer. These findings provide a basis for further investigation into the role of CDK12 inhibition as a therapeutic approach, particularly in advanced disease settings.
Journal
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor) • CDK12 (Cyclin dependent kinase 12) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • SECTM1 (Secreted and transmembrane 1)
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ER positive • HER-2 negative • HER-2 negative + ER positive
5ms
Genomic landscapes of endometrioid and mucinous ovarian cancers and morphologically similar tumor types. (PubMed, Cancer Res Commun)
In contrast, mutation and methylation patterns in ovarian mucinous carcinomas were different from gastrointestinal mucinous carcinomas. These analyses provide insights into the genomic landscapes and origins of mucinous and endometrioid ovarian carcinomas, providing new avenues for early clinical intervention and management of patients with these cancers.
Journal
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ER (Estrogen receptor) • PTEN (Phosphatase and tensin homolog) • NF1 (Neurofibromin 1) • SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily A, member 4) • JAK1 (Janus Kinase 1) • RAD51C (RAD51 paralog C) • MBD4 (Methyl-CpG Binding Domain 4, DNA Glycosylase) • NOTCH4 (Notch 4)