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BIOMARKER:

KDM5C mutation

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Other names: KDM5C, Lysine Demethylase 5C, Jumonji, AT Rich Interactive Domain 1C (RBP2-Like), Jumonji/ARID Domain-Containing Protein 1C, Lysine (K)-Specific Demethylase 5C, Lysine-Specific Demethylase 5C, Histone Demethylase JARID1C, DXS1272E, JARID1C, XE169,Jumonji, AT Rich Interactive Domain 1C, JmjC Domain-Containing Protein SMCX ,Mental Retardation, X-Linked 13, Smcy Homolog, X-Linked (Mouse), Smcx Homolog, X Chromosome, Smcy Homolog, X-Linked, Protein Xe169, Protein SmcX, MRXSCJ, MRXSJ, MRX13, MRXJ
Entrez ID:
Related biomarkers:
5ms
Genetic and Epigenetic Characteristics in Isolated Pancreatic Metastases of Clear-Cell Renal Cell Carcinoma. (PubMed, Int J Mol Sci)
an increased incidence of KDM5C mutations, which, in common with increased PBRM1 alterations, is also associated with a favourable outcome; and 5. angiogenetic biomarkers are increased in tumour tissue, while inflammatory biomarkers are decreased, which explains the good response to TKI therapy and lack of sensitivity to IT.
Review • Journal
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PBRM1 (Polybromo 1) • KDM5C (Lysine Demethylase 5C)
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PBRM1 mutation • KDM5C mutation
8ms
Cuproptosis related gene PDHB is identified as a biomarker inversely associated with the progression of clear cell renal cell carcinoma. (PubMed, BMC Cancer)
Our results demonstrated that PDHB could inhibit the proliferation, migration and invasion in ccRCC cells, which might be a prognostic predictor of ccRCC. Targeting this molecular might provide a new therapeutic strategy for patients with advanced ccRCC.
Journal
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PBRM1 (Polybromo 1) • KDM5C (Lysine Demethylase 5C) • DLAT (Dihydrolipoamide S-Acetyltransferase) • FDX1 (Ferredoxin 1) • PDHB (Pyruvate Dehydrogenase E1 Subunit Beta)
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PBRM1 mutation • KDM5C mutation
11ms
PBRM1 and KDM5C cooperate to define high-angiogenesis tumors and increased antiangiogenic response in renal cancer. (PubMed, Am J Cancer Res)
Validation in the IMmotion151 trial revealed a similar correlation with increased angiogenesis and the PFS of patients in the VEGFR-TKI-arm was the longest in PBRM1&KDM5C mutated cases, intermediate for only PBRM1 or only KDM5C mutated patients and the shortest in non-mutated cases (P=0.009 and 0.025, for PBRM1&KDM5C and PBRM1 versus non-mutated cases). In conclusion, somatic PBRM1 and KDM5C mutations are common in patients with metastatic ccRCC and likely cooperate increasing tumor angiogenesis and VEGFR-TKI-based antiangiogenic therapy benefit.
Journal
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PBRM1 (Polybromo 1) • KDM5C (Lysine Demethylase 5C)
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EGFR mutation • PBRM1 mutation • KDM5C mutation
1year
Exploration of Morphological Features of Clear Cell Renal Cell Carcinoma With PBRM1, SETD2, BAP1, or KDM5C Mutations. (PubMed, Int J Surg Pathol)
B7H3 was negative in all tumors. Morphologic findings in this small cohort may suggest why PBRM1 mutation does not correlate with decreased survival, whereas BAP1 mutation usually predicts poor outcomes.
Journal • PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • PBRM1 (Polybromo 1) • BAP1 (BRCA1 Associated Protein 1) • CD276 (CD276 Molecule) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • KDM5C (Lysine Demethylase 5C)
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PBRM1 mutation • BAP1 mutation • VHL mutation • KDM5C mutation • SETD2 mutation
over1year
Thoracic SMARCA4-Deficient Undifferentiated Tumor: Cytomorphologic Features and Ancillary Studies (USCAP 2023)
SMARCA4-UTs are aggressive malignant neoplasms associated with dismal outcomes, and our study shows that it is possible to diagnose this entity on limited samples. Since most cases present with metastasis, majority will only be diagnosed on cytology and small biopsies. Therefore, awareness of the cytologic features is paramount.
PD(L)-1 Biomarker • IO biomarker
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TP53 (Tumor protein P53) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily A, member 4) • CHEK2 (Checkpoint kinase 2) • CD34 (CD34 molecule) • KDM5C (Lysine Demethylase 5C) • NKX2-1 (NK2 Homeobox 1) • SOX2 • MUTYH (MutY homolog) • SALL4 (Spalt Like Transcription Factor 4) • SMARCA2 (SWI/SNF Related, Matrix Associated, Actin Dependent Regulator Of Chromatin, Subfamily A, Member 2) • SYP (Synaptophysin)
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TP53 mutation • SMARCA4 mutation • KDM5C mutation • PD-L1 mutation
almost2years
Mutations in KMT2C, BCOR and KDM5C Predict Response to Immune Checkpoint Blockade Therapy in Non-Small Cell Lung Cancer. (PubMed, Cancers (Basel))
Cancer Genome Atlas (TCGA) pan-cancer analysis suggested that the association of KMT2C/BCOR/KDM5C mutations with ICB response observed here might not result from DNA repair defects. In conclusion, our data indicate that KMT2C/BCOR/KDM5C mutation has the potential to serve as a predictive biomarker, alone or combined with PD-L1 expression or TMB, for ICB therapy in NSCLC.
Journal • Checkpoint inhibition • Tumor Mutational Burden • PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • TMB (Tumor Mutational Burden) • KMT2C (Lysine Methyltransferase 2C) • BCOR (BCL6 Corepressor) • KDM5C (Lysine Demethylase 5C)
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PD-L1 expression • TMB-H • KMT2C mutation • KDM5C mutation
over2years
Deficiency of the X-inactivation escaping gene KDM5C in clear cell renal cell carcinoma promotes tumorigenicity by reprogramming glycogen metabolism and inhibiting ferroptosis. (PubMed, Theranostics)
This work revealed that a histone modifier gene inactive mutation reprogramed glycogen metabolism and helped to explain the long-standing puzzle of male predominance in human cancer. In addition, our findings may suggest the therapeutic value of targeting glycogen metabolism in ccRCC.
Journal
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VHL (von Hippel-Lindau tumor suppressor) • KDM5C (Lysine Demethylase 5C)
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VHL mutation • KDM5C mutation
over2years
[VIRTUAL] Correlating immune cell infiltration patterns with recurrent somatic mutations in clear cell renal cell carcinoma (AUA 2021)
This study provides evidence that there are associations between somatic mutations, such as SETD2 and KDM5C, and macrophage and T cell infiltration patterns in the TIME in ccRCC. Sequencing-derived xCell enrichment scores from TCGA, CPTAC, and AVATAR were discordant with the IF-derived immune cell infiltration findings. These novel associations have the potential to inform precision research and immunotherapeutic treatment strategies.
IO biomarker
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TP53 (Tumor protein P53) • CD8 (cluster of differentiation 8) • PBRM1 (Polybromo 1) • BAP1 (BRCA1 Associated Protein 1) • VHL (von Hippel-Lindau tumor suppressor) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • CD163 (CD163 Molecule) • KDM5C (Lysine Demethylase 5C) • CD68 (CD68 Molecule) • FOXP3 (Forkhead Box P3) • MRC1 (Mannose Receptor C-Type 1)
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TP53 mutation • PBRM1 mutation • BAP1 mutation • VHL mutation • KDM5C mutation • SETD2 mutation
almost3years
Correlating Immune Cell Infiltration Patterns with Recurrent Somatic Mutations in Advanced Clear Cell Renal Cell Carcinoma. (PubMed, Eur Urol Focus)
This study provides evidence that common somatic mutations in ccRCC, such as SETD2, PBRM1, and KDM5C, are associated with distinct immune infiltration patterns within the TIME.
Journal • IO biomarker
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TP53 (Tumor protein P53) • PBRM1 (Polybromo 1) • BAP1 (BRCA1 Associated Protein 1) • SETD2 (SET Domain Containing 2, Histone Lysine Methyltransferase) • KDM5C (Lysine Demethylase 5C) • FOXP3 (Forkhead Box P3) • MRC1 (Mannose Receptor C-Type 1)
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TP53 mutation • PBRM1 mutation • BAP1 mutation • KDM5C mutation • SETD2 mutation
over3years
Relationship between visceral adipose tissue and genetic mutations (VHL and KDM5C) in clear cell renal cell carcinoma. (PubMed, Radiol Med)
This study demonstrates for the first time an increased amount of TAT, especially VAT, in the ccRCC-VHL and ccRCC-KDM5C groups. The effect was greater for the ccRCC-KDM5C group.
Journal
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VHL (von Hippel-Lindau tumor suppressor) • KDM5C (Lysine Demethylase 5C)
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VHL mutation • KDM5C mutation
over3years
[VIRTUAL] KDM5C Mutation Is Associated with Better Immunotherapy Outcomes in Non–Small Cell Lung Cancer (IASLC-WCLC 2020)
In the validation cohort, the immunotherapy efficacy of patients with KDM5C mutations was better than that of KDM5C wild-type patients, with median overall survival 21 months (95% CI, 12.4 to 29.6) and 11 months (95% CI, 8.9 to 13.1) (hazard ratio for death, 0.63; 95% CI, 0.26 to 1.53). Conclusion KDM5C mutations are associated to better efficacy of immunotherapy and have potential value for guiding clinical practice.
Tumor Mutational Burden • PD(L)-1 Biomarker • IO biomarker
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ARID1B (AT-Rich Interaction Domain 1B) • KDM5C (Lysine Demethylase 5C)
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PD-L1 expression • KDM5C mutation • TMB + PD-L1 expression
over3years
[VIRTUAL] Characterization of renal cell carcinoma (RCC) with VHL mutation (ESMO Asia 2020)
Legal entity responsible for the study: The authors. Funding: Has not received any funding.
Tumor Mutational Burden
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TMB (Tumor Mutational Burden) • PBRM1 (Polybromo 1) • BAP1 (BRCA1 Associated Protein 1) • VHL (von Hippel-Lindau tumor suppressor) • KDM5C (Lysine Demethylase 5C)
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TMB-H • PBRM1 mutation • BAP1 mutation • VHL mutation • KDM5C mutation
over3years
[VIRTUAL] Associating Specific Somatic Mutations with Immune Infiltration Patterns in Metastatic Clear Cell Renal Cell Carcinoma (SUO 2020)
This study provides evidence that common somatic mutations in ccRCC, such as SETD2, PBRM1, and KDM5C, may be associated with distinct immune infiltration patterns within the TIME. These novel associations have the potential to inform precision research and immunotherapeutic treatment strategies.Funding: Urology Care Foundation Research Scholar Award Program and Society for Urologic Oncology (to BJM); the United States Army Medical Research Acquisition Activity Department of Defense (KC180139 to BJM);
IO biomarker
|
TP53 (Tumor protein P53) • CD8 (cluster of differentiation 8) • PBRM1 (Polybromo 1) • BAP1 (BRCA1 Associated Protein 1) • VHL (von Hippel-Lindau tumor suppressor) • KDM5C (Lysine Demethylase 5C) • CD68 (CD68 Molecule) • FOXP3 (Forkhead Box P3)
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TP53 mutation • PBRM1 mutation • BAP1 mutation • VHL mutation • KDM5C mutation