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GENE:

KDM5B (Lysine Demethylase 5B)

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Other names: KDM5B, Lysine Demethylase 5B, PLU-1, CT31, Cancer/Testis Antigen 31, RBBP2H1A, PPP1R98, JARID1B, [Histone H3]-Trimethyl-L-Lysine(4) Demethylase 5B, Protein Phosphatase 1, Regulatory Subunit 98, Retinoblastoma-Binding Protein 2 Homolog 1, Jumonji/ARID Domain-Containing Protein 1B, Jumonji, AT Rich Interactive Domain 1B, Lysine (K)-Specific Demethylase 5B, Lysine-Specific Demethylase 5B, Histone Demethylase JARID1B, RBP2-H1, PLU1, Jumonji, AT Rich Interactive Domain 1B (RBP2-Like), Retinoblastoma-Binding Protein 2, Homolog 1A, Putative DNA/Chromatin Binding Motif, RBBP2H1, MRT65, PUT1
Associations
Trials
11d
KDM5B cooperates with CRL4B complex to promote the tumorigenesis of ER+ breast cancer via regulating cholesterol metabolism. (PubMed, Cell Death Dis)
KDM5B upregulation was significantly negatively correlated with the survival rates in various cancer types, including thyroid, lung, esophageal and colorectal cancers. Overall, these findings establish a novel regulatory axis in cholesterol metabolism, uncover potential therapeutic vulnerabilities in ER+ breast cancer, and suggest that targeting the KDM5B could provide a strategy to curb tumor progression.
Journal
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ER (Estrogen receptor) • DDB1 (Damage Specific DNA Binding Protein 1) • CUL4B (Cullin 4B) • KDM5B (Lysine Demethylase 5B)
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ER positive
18d
Integrated Multi-Omic Analysis Reveals KDM5B as a Regulator of Microglial Reactivity to Immunomodulatory Stimuli. (PubMed, J Proteome Res)
Through this comprehensive characterization, KDM5B-depleted microglia exhibited broad remodeling of immune reactivity, including reduced intracellular and secreted inflammatory responses to lipopolysaccharide as well as distinct modulation of alcohol- and interleukin-4-induced pathways, that was functionally demonstrated by altered cytokine secretion profiles. Results from this study provide critical insight into KDM5B-mediated immunological effects on microglial function.
Journal
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IL4 (Interleukin 4) • KDM5B (Lysine Demethylase 5B)
2ms
Xianglian Pills ameliorate ulcerative colitis combined with depression in mice via histone demethylation (PubMed, Zhongguo Zhong Yao Za Zhi)
Fifty male C57BL/6 mice were randomized into control, model, XLP(2.7, 5.4 mg·g~(-1)), and 5-aminosalicylic acid+fluoxetine groups...Furthermore, XLP lowered the levels of TNF-α, IL-1β, IL-6, and IL-23, down-regulated the transcript levels of IL-6 and IL-23α and the protein level of H3K4me3 while up-regulating the protein level of KDM5B in the cerebral cortical area and the colon tissue, and increased the binding of KDM5B to the IL-6 and IL-23α promoters. XLP may affect H3K4me3 demethylation through KDM5B to reduce the production of inflammatory factors and alleviate the inflammatory response, thus ameliorating UC combined with depression.
Preclinical • Journal
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IL6 (Interleukin 6) • TNFA (Tumor Necrosis Factor-Alpha) • IL23A (Interleukin 23 Subunit Alpha) • IL1B (Interleukin 1, beta) • KDM5B (Lysine Demethylase 5B)
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fluoxetine
2ms
Melanomas and Mesenchymal Tumors Arising in Giant Congenital Melanocytic Nevi: Clinico-Pathological and Molecular Characterization of a Case Series. (PubMed, Pigment Cell Melanoma Res)
An inactivating ASXL1 variant and an in-frame KDM5B::LPGAT1 fusion were identified in one melanoma; paternal disomy of 11p15.5 in both embryonal rhabdomyosarcomas. Mesenchymal tumors and melanomas showed distinct transcriptional profiles enriched in muscle and synapse organization and epidermal differentiation genes, respectively.
Journal
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BRAF (B-raf proto-oncogene) • NRAS (Neuroblastoma RAS viral oncogene homolog) • ASXL1 (ASXL Transcriptional Regulator 1) • KDM5B (Lysine Demethylase 5B)
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BRAF V600E • BRAF V600 • NRAS Q61 • BRAF fusion
2ms
Suppressing the OTUD7A/KDM5B/GABPA axis enhances the sensitivity of cisplatin through inducing ferroptosis in KRAS-mutant LUAD. (PubMed, Cell Death Dis)
Additionally, in in vivo organoid models, cisplatin (CDDP) induced ferroptosis combined with GABPA inhibition demonstrated superior anticancer effects compared to conventional platinum-based drugs. This research identifies new targets and regulatory networks that hold promise for developing ferroptosis-based therapies for KRAS-mutant LUAD.
Journal
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KRAS (KRAS proto-oncogene GTPase) • KDM5B (Lysine Demethylase 5B)
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KRAS mutation
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cisplatin
2ms
Human stem cell models for group 3 medulloblastoma uncover JARID1B as a regulator of the chromatin landscape. (PubMed, bioRxiv)
Knockdown of JARID1B in human G3MB cell lines reduced growth, supporting potential as a therapeutic target. We conclude that a MYC-TGFβ-JARID1B axis represses target genes to drive G3MB and present new humanized models for G3MB to understand epigenetic dysregulation in G3MB.
Journal
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ARID1B (AT-Rich Interaction Domain 1B) • KDM5B (Lysine Demethylase 5B)
2ms
A cancer-testis antigen signature for predicting prognosis and response to immunotherapy in acute myeloid leukemia. (PubMed, Medicine (Baltimore))
Drug sensitivity profiling highlighted differential therapeutic vulnerabilities between risk groups. This study established and validated a novel CTA-based prognostic tool for prognostic stratification and personalized treatment guidance in AML, bridging molecular insights with clinical applications.
Journal • IO biomarker
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ACRBP (Acrosin Binding Protein) • IGF2BP3 (Insulin Like Growth Factor 2 MRNA Binding Protein 3) • KDM5B (Lysine Demethylase 5B) • SPAG1 (Sperm Associated Antigen 1)
2ms
Gentianine suppresses renal cell carcinoma progression via direct interaction with KDM5B and ferroptosis activation. (PubMed, Cell Signal)
Importantly, combining GTN with the ferroptosis inducer RSL3 synergistically enhances antitumor efficacy in vivo. Our study unveils a previously unrecognized KDM5B/ferroptosis axis through which GTN exerts its antitumor effects, positioning GTN as a promising lead compound for ferroptosis-targeted therapy in RCC.
Journal
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GPX4 (Glutathione Peroxidase 4) • SLC7A11 (Solute Carrier Family 7 Member 11) • KDM5B (Lysine Demethylase 5B)
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RSL3
3ms
Lysine methylation-mediated SMYD2 degradation by casticin sensitizes non-small-cell lung cancer cells to osimertinib therapy. (PubMed, Biochem Pharmacol)
Collectively, these results indicated that Casticin suppresses and sensitizes non-small-cell lung cancer cells to EGFR-TKIs. Casticin may serve as a sensitizing agent by targeting SMYD2 to improve the efficacy of EGFR-TKIs.
Journal
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KDM5B (Lysine Demethylase 5B) • SMYD2 (SET And MYND Domain Containing 2)
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EGFR mutation • RAS mutation
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Tagrisso (osimertinib)
5ms
Discovery of actionable drug targets to enhance T-cell infiltration and immune checkpoint blockade efficacy in pleural mesothelioma. (PubMed, Lung Cancer)
This comprehensive transcriptomic characterization of T-cell exclusion in PM reveals that targeting cilium-based Hedgehog signaling, in addition to multiple other actionable drug targets, could enhance the efficacy of ICB treatment in PM.
Journal • Checkpoint inhibition • PD(L)-1 Biomarker • IO biomarker
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HER-2 (Human epidermal growth factor receptor 2) • SMO (Smoothened Frizzled Class Receptor) • ACVR1 (Activin A Receptor Type 1) • RPS6KB1 (Ribosomal Protein S6 Kinase B1) • CMTM4 (CKLF Like MARVEL Transmembrane Domain Containing 4) • KDM5B (Lysine Demethylase 5B) • SOX4 (SRY-Box Transcription Factor 4) • BMPR1B (Bone Morphogenetic Protein Receptor Type 1B)
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Opdivo (nivolumab) • Yervoy (ipilimumab)
5ms
Roles of KDM5 demethylases in therapeutic resistance of cancers. (PubMed, Epigenetics Chromatin)
Furthermore, we discuss emerging therapeutic strategies aimed at overcoming treatment resistance by targeting KDM5 demethylases. These insights provide a foundation for the development of innovative therapeutic interventions to enhance the efficacy of existing cancer treatments, offering a transformative approach to improving long-term patient survival and quality of life.
Review • Journal
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KDM5C (Lysine Demethylase 5C) • KDM5D (Lysine Demethylase 5D) • KDM5A (Lysine Demethylase 5A) • KDM5B (Lysine Demethylase 5B)
6ms
Dysregulation of chromatin remodeling genes predicts clinical outcomes in acute myeloid leukemia. (PubMed, J Formos Med Assoc)
We identified six biomarkers, namely ARF6, ASF1B, CHD5, FLNA, KDM5B, and SPI1, thereby establishing a theoretical foundation for clinical diagnosis of AML.
Clinical data • Journal • Tumor mutational burden • IO biomarker
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TMB (Tumor Mutational Burden) • CD4 (CD4 Molecule) • SPI1 (Spi-1 Proto-Oncogene) • ASF1B (Anti-Silencing Function 1B Histone Chaperone) • KDM5B (Lysine Demethylase 5B)