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BIOMARKER:

Inflammatory gene signature

1year
Machine learning approach identifies inflammatory gene signature for predicting survival outcomes in hepatocellular carcinoma. (PubMed, Sci Rep)
Our study delineates inflammation-related genomic changes in HCC, unveiling prognostic biomarkers with potential therapeutic implications. These findings deepen our understanding of HCC molecular mechanisms and may guide personalized therapeutic approaches, ultimately improving patient outcomes.
Journal • Gene Signature • Machine learning
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S100A9 (S100 Calcium Binding Protein A9)
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Inflammatory gene signature • S100A9 expression
over1year
Systematic literature review on early clinical evidence for immune-resolution therapies and potential benefits to patients and healthcare providers. (PubMed, Front Immunol)
Further research and consensus are needed to assess a treatment's ability to induce long-term remission or low disease activity. https://www.crd.york.ac.uk/prospero/display_record.php?ID=CRD42023406489, identifier CRD42023406489.
Review • Journal
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TNFA (Tumor Necrosis Factor-Alpha) • CXCL8 (Chemokine (C-X-C motif) ligand 8) • IL1A (Interleukin 1, alpha) • IL1B (Interleukin 1, beta) • IL22 (Interleukin 22) • PTPN22 (Protein Tyrosine Phosphatase Non-Receptor Type 22) • TSLP (Thymic Stromal Lymphopoietin) • REG1A (Lithostathine-1-alpha)
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Inflammatory gene signature
over1year
Investigation of High Frequency Irreversible Electroporation for Canine Spontaneous Primary Lung Tumor Ablation. (PubMed, Biomedicines)
Additionally, we preliminarily evaluated the technical feasibility of delivering H-FIRE percutaneously under CT guidance to canine lung tumor patients (n = 2). Overall, H-FIRE treatment was well tolerated with no adverse clinical events, and our results suggest H-FIRE potentially altered the tumor immune microenvironment.
Journal • IO biomarker
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IL6 (Interleukin 6) • IDO1 (Indoleamine 2,3-dioxygenase 1) • CASP3 (Caspase 3) • FOXP3 (Forkhead Box P3) • MRC1 (Mannose Receptor C-Type 1)
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Inflammatory gene signature • IL6 expression • FOXP3 expression
almost2years
TYPP: TYK2 Inhibition in Paradoxical Psoriasis (clinicaltrials.gov)
P2/3, N=26, Not yet recruiting, Prof Curdin Conrad
New P2/3 trial
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Inflammatory gene signature
2years
Personalizing Oncolytic Immunovirotherapy Approaches. (PubMed, Mol Diagn Ther)
Integrative predictors could include tumor mutational burden (TMB), inflammatory gene signature, phenotype of tumor-infiltrating lymphocytes, tumor microenvironment (TME), and immune checkpoint receptor expression on both immune and target cells. Additionally, the gut microbiota has recently been recognized as a systemic immunomodulatory factor and could further be used in the optimization of individualized immunovirotherapy algorithms.
Journal • Oncolytic virus • Tumor mutational burden • PD(L)-1 Biomarker • IO biomarker
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TMB (Tumor Mutational Burden)
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Inflammatory gene signature
2years
Epigenetic dysregulation of eukaryotic initiation factor 3 subunit E (eIF3E) by lysine methyltransferase REIIBP confers a pro-inflammatory phenotype in t(4;14) myeloma. (PubMed, Haematologica)
Activation of this pathway is targetable using Ibrutinib and partially mitigated bortezomib resistance in an REIIBP xenograft model. Mechanistically, REIIBP upregulated TLR7 through eIF3E, and this relied on eIF3E RNA-binding function instead of its canonical protein synthesis activity, as demonstrated by direct binding to the 3'UTR of TLR7 mRNA. Altogether, we provided a rationale that coexistence of different NSD2 isoforms induced diversified oncogenic programs that should be considered in the strategies for t(4;14)-targeted therapy.
Journal
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IL6 (Interleukin 6) • TLR7 (Toll Like Receptor 7) • NSD2 (Nuclear Receptor Binding SET Domain Protein 2)
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Chr t(4;14) • Inflammatory gene signature
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Imbruvica (ibrutinib) • bortezomib
over2years
A Pro-Inflammatory Gene Signature Characterizes a Better Risk Aged AML Patient Group in ECOG-ACRIN Cancer Research Group's Clinical Trial E3999 (ASH 2023)
Our results suggest that the low-risk aAML patients were characterized by a more mature hematopoietic cell gene expression signature and cell surface markers as well as a pro-inflammatory state. Our study supports the possibility that pro-inflammatory cytokines and/or signaling could mediate AML cell survival in the low-risk aAML patient group. The high-risk aAML patients were characterized by a more primitive hematopoietic and leukemic stem cell gene expression signature.
Clinical • Gene Signature
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NPM1 (Nucleophosmin 1) • IFNG (Interferon, gamma) • TNFA (Tumor Necrosis Factor-Alpha) • CD34 (CD34 molecule)
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NPM1 mutation • Inflammatory gene signature
over2years
Mediator Kinase/CDK8 Inhibition As a Strategy to Improve FLT3 Inhibitor Activity in Acute Myeloid Leukemia (ASH 2023)
RAS mutations also decrease efficacy of the BCL2 inhibitor venetoclax now widely used in AML, suggesting an anti-apoptotic influence of MAPK signaling...Using GSEA we found that gilteritinib stimulated adaptive interferon/inflammatory gene signatures at 16h drug treatment, but this response was restrained by addition of SEL120...We speculate this latter effect may in part alter an AML cell's differentiation state to sensitize cells to apoptosis, though further study to explore this hypothesis is needed. Our in vitro and in vivo efficacy data further validated combined FLT3i/CDK8i as a promising investigational strategy to pre-empt or overcome MAPK-mediated FLT3 TKI resistance.
IO biomarker
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FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • IRF8 (Interferon Regulatory Factor 8) • SPI1 (Spi-1 Proto-Oncogene)
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NRAS mutation • FLT3-ITD mutation • FLT3 mutation • RAS mutation • NRAS G12 • Inflammatory gene signature • IRF8 expression • NRAS G12C
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Venclexta (venetoclax) • Xospata (gilteritinib) • romaciclib (RVU120)
over2years
Clonal Hematopoiesis-Related Mutations Are Associated with Favorable Clinical Benefit Following Luspatercept Treatment in Patients with Lower-Risk Myelodysplastic Syndromes: A Subgroup Analysis from the Phase 3 COMMANDS Trial (ASH 2023)
This retrospective subgroup analysis of patients in the COMMANDS trial with the most frequent CHIP-related mutations (DNMT3A, TET2, ASXL1, and SF3B1) demonstrated novel effects of luspatercept in clonal hematopoiesis-related consequences including improvements in anemia, cytopenias, and reduced inflammation. Most importantly, NT-proBNP and elevated hepcidin levels were significantly downregulated in responders following luspatercept treatment. These results warrant evaluation of luspatercept in patients with high-risk CHIP mutations including clonal cytopenia of undetermined significance and patients with anemia of inflammation.
Clinical • P3 data
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DNMT3A (DNA methyltransferase 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • GDF15 (Growth differentiation factor 15) • NPPB (Natriuretic Peptide B)
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DNMT3A mutation • ASXL1 mutation • TET2 mutation • SF3B1 mutation • Inflammatory gene signature
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Reblozyl (luspatercept-aamt)
over2years
Autotaxin suppresses cytotoxic T cells via LPAR5 to promote anti-PD-1 resistance in non-small cell lung cancer. (PubMed, J Clin Invest)
Additionally, ATX was significantly correlated with inflammatory gene signatures, including a CD8+ cytolytic score in multiple lung adenocarcinoma patient data sets, suggesting that an activated tumor-immune microenvironment upregulates ATX and thus provides an opportunity for cotargeting to prevent acquired resistance to anti-PD-1 treatment. These data reveal the ATX/LPA axis as an immunosuppressive pathway that diminishes the immune checkpoint blockade response in lung cancer.
Journal • PD(L)-1 Biomarker • IO biomarker
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KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • CD8 (cluster of differentiation 8) • LPAR5 (Lysophosphatidic Acid Receptor 5)
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TP53 mutation • KRAS mutation • Inflammatory gene signature