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GENE:

HOXA9 (Homeobox A9)

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Other names: HOXA9, Homeobox A9, Homeobox Protein Hox-A9, Homeobox Protein Hox-1G, HOX1G, Homeodomain Protein HOXA9, Homeo Box A9, HOX1.7, ABD-B, HOXA9, HOX1
27d
Identification and validation of HOXB3 hypomethylation as a novel prognostically epigenetic biomarker in acute myeloid leukemia. (PubMed, Front Immunol)
AML with HOXB3 hypomethylation usually has unique genetic patterns such as a normal karyotype, cytogenetic/molecular-intermediate risk, and mutations in FLT3-ITD, NPM1 and DNMT3A. Despite these associations, HOXB3 hypomethylation may serve as an independent prognostic biomarker for AML.
Journal
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FLT3 (Fms-related tyrosine kinase 3) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • HOXA9 (Homeobox A9) • MIR193B (MicroRNA 193b) • HOXB3 (Homeobox B3)
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FLT3-ITD mutation • FLT3 mutation • NPM1 mutation
27d
Menin Inhibition in Acute Myeloid Leukemia: Pathobiology, Progress and Promise. (PubMed, Biomedicines)
We evaluate the latest data on various menin inhibitors-both as monotherapy and in combinations-emphasizing their efficacy and safety profiles. As new evidence continues to accumulate with recent drug approvals and ongoing randomized, phase 3 studies, menin inhibitors are rapidly becoming a component of the AML treatment paradigm for relapsed/refractory and likely newly diagnosed disease.
Review • Journal
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NPM1 (Nucleophosmin 1) • KMT2A (Lysine Methyltransferase 2A) • NUP98 (Nucleoporin 98 And 96 Precursor 2) • HOXA9 (Homeobox A9) • MEIS1 (Meis Homeobox 1)
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NPM1 mutation • MLL rearrangement
28d
Homeodomain-driven oncogenic diversion to a TCRγδ phenotype in T-cell Acute Lymphoblastic Leukemia. (PubMed, Blood)
Similar to the ETP-like subtype, bona fide γδ T-ALLs were associated with a poor initial response to chemotherapy, but were sensitive to the BCL2-inhibitor venetoclax. Our results reveal developmental heterogeneity behind γδTCR expression in T-ALLs, and suggest that overrepresentation of this subtype reflects αβ-lineage commitment repression by HD+ oncogenes.
Journal • IO biomarker
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KMT2A (Lysine Methyltransferase 2A) • CD34 (CD34 molecule) • HOXA9 (Homeobox A9)
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Venclexta (venetoclax)
1m
Retinal determination network reactivation drives chemoresistance and blocks myeloid differentiation in acute myeloid leukemia. (PubMed, Cell Rep)
Genetic ablation of SIX1 and pharmacological disruption of the SIX1/EYA1 interaction impair AML maintenance and resensitize cells to DNA-damaging therapies. These findings establish RDGN as a promising therapeutic target in AML and potentially in solid tumors marked by SIX1/RDGN re-expression.
Journal
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HOXA9 (Homeobox A9) • MEIS1 (Meis Homeobox 1) • SIX1 (SIX Homeobox 1)
1m
Identification of cryptic KMT2A-PTD and other novel fusion genes by transcriptome sequencing alters molecular risk stratification in AML-NK. (PubMed, J Mol Med (Berl))
Fusion-based ELN 2022 reclassified most intermediate-risk patients. RNA-seq enhances prognostic assessment in AML-NK.
Journal
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NPM1 (Nucleophosmin 1) • KMT2A (Lysine Methyltransferase 2A) • NUP98 (Nucleoporin 98 And 96 Precursor 2) • NSD1 (Nuclear Receptor Binding SET Domain Protein 1) • HOXA9 (Homeobox A9) • LATS2 (Large Tumor Suppressor Kinase 2)
1m
Integrative Transcriptomic and Perturbagen Analyses Reveal Sex-Specific Molecular Signatures Across Glioma Subtypes. (PubMed, Cancers (Basel))
Perturbagen analysis nominated signature-reversing compounds across sexes, including histone deacetylase inhibitors, Aurora kinase inhibitors, microtubule-targeting agents such as vindesine, and multi-kinase inhibitors targeting VEGFR, PDGFR, FLT3, PI3K, and MTOR. Glioma grade comparisons reveal a shared neuronal-synaptic program accompanied by sex-specific transcriptional remodeling. These findings support sex-aware therapeutic strategies that pair modulation of neuron-glioma coupling with chromatin- or receptor tyrosine kinase/angiogenic-targeted agents, and they nominate biomarkers such as GLI1, MYOD1, GCGR, PRLHR, and HIST1H2BH for near-term validation.
Journal
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FLT3 (Fms-related tyrosine kinase 3) • GLI1 (GLI Family Zinc Finger 1) • SAA1 (Serum Amyloid A1) • HOXA9 (Homeobox A9) • GRIN2A (Glutamate Ionotropic Receptor NMDA Type Subunit 2A) • CHRNA7 (Cholinergic Receptor Nicotinic Alpha 7 Subunit) • GRIN2B (Glutamate Ionotropic Receptor NMDA Type Subunit 2B) • MYOD1 (Myogenic Differentiation 1)
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vindesine
2ms
NUP98 rearrangements in adult AML patients: evaluation of clinical implications and identification of novel fusion partners. (PubMed, Leukemia)
Allogeneic hematopoietic stem cell transplantation was associated with better survival, underscoring its significance. These findings reveal the genetic and clinical heterogeneity of NUP98-rearranged AML in adults and support its classification as a distinct entity, highlighting the need for fusion partner-specific therapeutic strategies.
Journal
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FLT3 (Fms-related tyrosine kinase 3) • NPM1 (Nucleophosmin 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • WT1 (WT1 Transcription Factor) • NUP98 (Nucleoporin 98 And 96 Precursor 2) • NSD1 (Nuclear Receptor Binding SET Domain Protein 1) • HOXA9 (Homeobox A9) • MEOX2 (Mesenchyme Homeobox 2)
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FLT3-ITD mutation • NPM1 mutation • TET2 mutation
2ms
Identification of a Musashi2 translocation as a novel oncogene in myeloid leukemia. (PubMed, Elife)
Although Gleevec has been transformative for CML, blast crisis CML remains relatively drug resistant...These data suggest that MSI2-HOXA9 acts, at least in part, by increasing expression of the mitochondrial polymerase POLRMT and augmenting mitochondrial function and basal respiration in blast crisis. Collectively, our findings demonstrate for the first time that translocations involving the stem and developmental signal MSI2 can be oncogenic and suggest that MSI, which we found to be a frequent partner for an array of translocations, could also be a driver mutation across solid cancers.
Journal
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ABL1 (ABL proto-oncogene 1) • BCR (BCR Activator Of RhoGEF And GTPase) • HOXA9 (Homeobox A9) • RRM1 (Ribonucleotide Reductase Catalytic Subunit M1) • RRM2 (Ribonucleotide Reductase Regulatory Subunit M2) • MSI2 (Musashi RNA Binding Protein 2)
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imatinib
2ms
Diagnostic and prognostic value of polygene methylation detection in ascites. (PubMed, Front Genet)
Cytological examination combined with methylation detection can greatly improve the diagnosis rate of malignant ascites. The methylation status of SHOX2 and SEPTIN9 genes is significantly correlated with the prognosis of patients with ascites.
Journal
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HOXA9 (Homeobox A9) • RASSF1 (Ras Association Domain Family Member 1) • SEPTIN9 (Septin 9) • SHOX2 (SHOX Homeobox 2)
2ms
Menin inhibitors for adult acute myeloid leukemia: 2025 update. (PubMed, Expert Opin Investig Drugs)
Menin inhibitor approval/use is expanding into other HOX-driven subtypes (e.g. NPM1, NUP98r), as frontline option and in combination settings. Monitoring for differentiation syndrome, QT interval prolongation, recognizing pseudo-progression, and supportive care needs remains essential to maximize patient benefit.
Review • Journal
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NPM1 (Nucleophosmin 1) • KMT2A (Lysine Methyltransferase 2A) • NUP98 (Nucleoporin 98 And 96 Precursor 2) • HOXA9 (Homeobox A9) • MEIS1 (Meis Homeobox 1) • MEN1 (Menin 1)
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Revuforj (revumenib) • Komzifti (ziftomenib) • bleximenib (JNJ-6617) • enzomenib (DSP-5336)
2ms
Targeting Ferroptosis in Nasopharyngeal Carcinoma: Mechanisms, Resistance, and Precision Therapeutic Opportunities. (PubMed, Int J Mol Sci)
Future directions include biomarker validation, optimization of drug delivery, early-phase clinical trial development, and multidisciplinary collaboration to balance ferroptosis induction in tumors while protecting normal tissues. Collectively, ferroptosis is emerging as both a vulnerability and a therapeutic opportunity for improving outcomes in NPC.
Review • Journal • IO biomarker
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KEAP1 (Kelch Like ECH Associated Protein 1) • HOXA9 (Homeobox A9) • GPX4 (Glutathione Peroxidase 4) • ACSL4 (Acyl-CoA Synthetase Long Chain Family Member 4) • SLC7A11 (Solute Carrier Family 7 Member 11) • IGF2BP2 (Insulin Like Growth Factor 2 MRNA Binding Protein 2) • METTL3 (Methyltransferase Like 3)