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DRUG CLASS:

DNA minor groove binder

24d
DNA-Binding Protein A Is Actively Secreted in a Calcium-and Inflammasome-Dependent Manner and Negatively Influences Tubular Cell Survival. (PubMed, Cells)
Given that CSD proteins YB-1 and DbpA fulfill the criteria of alarmins, we propose that their release signals an inherent danger to the host. Some data hint at an extracellular complex formation at a ratio of 10:1 (DbpA:YB-1) of both proteins.
Journal
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TNFA (Tumor Necrosis Factor-Alpha) • TNFRSF1A (TNF Receptor Superfamily Member 1A) • YBX1 (Y-Box Binding Protein 1) • NLRP3 (NLR Family Pyrin Domain Containing 3)
2ms
Detection of SEZ6, a therapeutic target, in medullary thyroid carcinoma. (PubMed, J Clin Endocrinol Metab)
SEZ6 may serve as a novel biomarker for MTCs. Although SEZ6 lacks any prognostic values in MTC, its positivity in 91% to 93% of MTCs, including MTCs without RET and RAS mutations, renders SEZ6-targetted antibody-drug conjugate therapy a promising targeted therapy for MTCs.
Journal
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SEZ6 (Seizure Related 6 Homolog)
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RAS mutation • RET mutation • SEZ6 expression
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ABBV-011
2ms
A Phase I First-in-Human Study of ABBV-011, a Seizure-Related Homolog Protein 6-Targeting Antibody-Drug Conjugate, in Patients With Small Cell Lung Cancer. (PubMed, Clin Cancer Res)
ABBV-011 1.0 mg/kg Q3W monotherapy was well tolerated and demonstrated encouraging antitumor activity in heavily pretreated patients with relapsed/refractory SCLC. SEZ6 is a promising novel SCLC target and warrants further investigation.
P1 data • Journal
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SEZ6 (Seizure Related 6 Homolog)
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ABBV-011
3ms
Anti-Skin Aging Potential, Antibacterial Activity, Inhibition of Single-Stranded DNA-Binding Protein, and Cytotoxic Effects of Acetone-Extracted Passiflora edulis (Tainung No. 1) Rind Extract on Oral Carcinoma Cells. (PubMed, Plants (Basel))
These results underscore the potential of P. edulis (Tainung No. 1) rind as a promising candidate for anti-skin aging, antibacterial, and anticancer applications, meriting further therapeutic investigation.
Journal
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CA9 (Carbonic anhydrase 9) • RPA1 (Replication Protein A1)
4ms
Regulation of DNA Damage Response by RNA/DNA-Binding Proteins: Implications for Neurological Disorders and Aging. (PubMed, Ageing Res Rev)
In this review, we discuss the emerging roles of common RDBPs from the heterogeneous nuclear ribonucleoprotein (hnRNP) family, such as TAR DNA binding protein-43 (TDP43) and fused in sarcoma (FUS) in controlling DNA damage response (DDR). We also explore the implications of RDBP pathology in aging and neurodegenerative diseases and provide a prospective on the therapeutic potential of targeting RDBP pathology mediated DDR defects for motor neuron diseases and aging.
Review • Journal
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TARDBP (TAR DNA Binding Protein) • FUS (FUS RNA Binding Protein)
6ms
Serum transactive response DNA binding protein 43 associates with poor short-term neurologic outcome after return of spontaneous circulation following cardiac arrest. (PubMed, Shock)
Elevated serum TDP-43 level was associated with and could be used together with Witnessed CA, IL-6, and NSE to predict poor 28-day neurologic outcome in patients after ROSC following cardiac arrest.
Journal
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IL6 (Interleukin 6) • TNFA (Tumor Necrosis Factor-Alpha) • TARDBP (TAR DNA Binding Protein) • CRP (C-reactive protein)
6ms
Comprehensive Analysis of the Expression, Prognosis, and Immune Infiltrates for Chromodomain-Helicase-DNA-Binding Proteins in Breast Tumor. (PubMed, Asian Pac J Cancer Prev)
The altered expression of some CHD members was significantly related to clinical cancer outcomes, and CHD1/2/8/9 could serve as potential prognostic biomarkers to improve the survival of BrCa patients. However, to evaluate the studied CHD members in detail are needed further investigations including experimental validation.
Journal • BRCA Biomarker • Epigenetic controller
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CHD1 (Chromodomain Helicase DNA Binding Protein 1) • CHD8 (Chromodomain Helicase DNA Binding Protein 8) • CHD2 (Chromodomain Helicase DNA Binding Protein 2) • MIR615 (MicroRNA 615) • MIRLET7B (MicroRNA Let-7b)
8ms
Z-DNA binding protein 1 orchestrates innate immunity and inflammatory cell death. (PubMed, Cytokine Growth Factor Rev)
In response to damaged mitochondrial DNA, ZBP1 can interact with cyclic GMP-AMP synthase to augment IFN-I responses but inhibits toll like receptor 9-mediated inflammatory responses. This review summarizes the structure and expression pattern of ZBP1, discusses its roles in human diseases through immune-dependent (e.g., the production of IFN-I and pro-inflammatory cytokines) and -independent (e.g., the activation of cell death) functions, and highlights the attractive prospect of manipulating ZBP1 as a promising therapeutic target in diseases.
Review • Journal • IO biomarker • Inflammatory cell
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CASP3 (Caspase 3) • TLR9 (Toll Like Receptor 9) • AIM2 (Absent In Melanoma 2) • CDK7 (Cyclin Dependent Kinase 7) • IGF2BP1 (Insulin Like Growth Factor 2 MRNA Binding Protein 1) • CGAS (Cyclic GMP-AMP Synthase) • RIPK1 (Receptor Interacting Serine/Threonine Kinase 1)
8ms
Highly Expressed Z-DNA Binding Protein 1 in Esophageal Cancer Promotes Tumor Growth. (PubMed, Dig Dis Sci)
This research proves that downregulation of ZBP1 can inhibit the progression of ESCA. This finding indicates that ZBP1 may be a novel biomarker to improve the diagnosis and treatment of ESCA.
Journal • Epigenetic controller
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IGF2BP1 (Insulin Like Growth Factor 2 MRNA Binding Protein 1)
8ms
ZNF827 is a single-stranded DNA binding protein that regulates the ATR-CHK1 DNA damage response pathway. (PubMed, Nat Commun)
We find that ZNF827 accumulates at stalled forks and DNA damage sites, where it activates ATR and promotes the engagement of homologous recombination-mediated DNA repair. Additionally, we demonstrate that ZNF827 depletion inhibits replication initiation and sensitizes cancer cells to the topoisomerase inhibitor topotecan, revealing ZNF827 as a therapeutic target within the DNA damage response pathway.
Journal
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CHEK1 (Checkpoint kinase 1) • RPA1 (Replication Protein A1)
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topotecan
9ms
New trial
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TARDBP (TAR DNA Binding Protein)
9ms
Trial completion
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SEZ6 (Seizure Related 6 Homolog)
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budigalimab (ABBV-181) • ABBV-011
12ms
Preclinical Characterization of Catabolic Pathways and Metabolism of ABBV-011, a Novel Calicheamicin-Based SEZ6 Targeting Antibody Drug Conjugate. (PubMed, Drug Metab Dispos)
Significance Statement Several in vitro and in vivo stability studies of ABBV-011, a calicheamicin-based ADC, identified circulating metabolites and catabolites and suggested that disulfide cleavage may be a key liability for the conjugated linker-payload. These observations may be relevant to other disulfide-linked ADCs, such as Mylotarg and Besponsa, both of which have reported similar half-lives that possibly indicate instability.
Preclinical • Journal
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SEZ6 (Seizure Related 6 Homolog)
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Besponsa (inotuzumab ozogamicin) • Mylotarg (gemtuzumab ozogamicin) • ABBV-011
12ms
An Exploration of Small Molecules That Bind Human Single-Stranded DNA Binding Protein 1. (PubMed, Biology (Basel))
These data suggest that small molecules can disrupt the interaction between hSSB1 and ssDNA, and may also affect the ability of cells to repair DNA damage. This test study of small molecules holds the potential to provide insights into fundamental biochemical questions regarding the OB-fold.
Journal
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RPA1 (Replication Protein A1)
1year
New P1 trial
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ABBV-011
1year
New P2/3 trial
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ABBV-011
over1year
WD Repeat and HMG Box DNA Binding Protein 1: An Oncoprotein at the Hub of Tumorigenesis and a Novel Therapeutic Target. (PubMed, Int J Mol Sci)
Additionally, the inhibitor of WDHD1 has been found to enhance radiation sensitivity, improve drug resistance, and significantly decrease tumor cell proliferation. This comprehensive review aims to provide an overview of the molecular structure, biological functions, and regulatory mechanisms of WDHD1 in tumors, thereby establishing a foundation for future investigations and potential clinical applications of WDHD1.
Review • Journal • Epigenetic controller
over1year
ESS2 controls prostate cancer progression through recruitment of chromodomain helicase DNA binding protein 1. (PubMed, Sci Rep)
Tamoxifen-inducible Ess2-knockout mice showed delayed prostate development with hypoplasia and disruption of luminal cells in the ventral prostate. Overall, these findings identified ESS2 acts as a transcriptional coregulator in prostate cancer and ESS2 can be novel epigenetic therapeutic target for CRPC.
Journal
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CCL2 (Chemokine (C-C motif) ligand 2) • CHD1 (Chromodomain Helicase DNA Binding Protein 1) • TGFB1 (Transforming Growth Factor Beta 1) • SMAD2 (SMAD Family Member 2)
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tamoxifen
over1year
Immunohistochemical Analysis of Single-Stranded DNA Binding Protein 2 in Non-Melanoma Skin Cancers. (PubMed, Biomedicines)
SSBP2 evaluation using IHC can be helpful in the differential diagnosis of SCC and BCC. SSBP2 expression was associated with tumor invasiveness in SCC.
Journal
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RPA1 (Replication Protein A1) • SSBP2 (Single Stranded DNA Binding Protein 2)
over1year
The Inhibitory Effects and Cytotoxic Activities of the Stem Extract of Nepenthes miranda against Single-Stranded DNA-Binding Protein and Oral Carcinoma Cells. (PubMed, Plants (Basel))
The binding capacity of these compounds was in the order sitosterol > hexadecanoic acid > oleic acid > plumbagin > 2-ethyl-3-methylnaphtho[2,3-b]thiophene-4,9-dione > methyl α-d-galactopyranoside > 3-methoxycatechol > catechol > pyrogallol > hydroxyhydroquinone; thus, sitosterol might exhibit the greatest inhibitory capacity against KpSSB among the selected compounds. Overall, these results may indicate the pharmacological potential of N. miranda for further therapeutic applications.
Journal
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CA9 (Carbonic anhydrase 9) • RPA1 (Replication Protein A1)
over1year
Biochemical and biophysical characterization of the nucleic acid binding properties of the RNA/DNA binding protein EWS. (PubMed, Biopolymers)
The RRM and RG2 region appear to bind nucleic acids promiscuously while the ZnF displayed more selectivity for single-stranded structures. With these results, the structural underpinnings of EWS recognition and binding of R-loops and other nucleic acid structures is better understood.
Journal
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FLI1 (Fli-1 Proto-Oncogene ETS Transcription Factor)
over1year
Enrollment closed • Enrollment change • Combination therapy
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budigalimab (ABBV-181) • ABBV-011
over1year
Base-resolution UV footprinting by sequencing reveals distinctive damage signatures for DNA-binding proteins. (PubMed, Nat Commun)
Positive damage modulation at some ETS transcription factor binding sites coincided at base level with melanoma somatic mutation hotspots. Our work provides proof of concept for the study of protein-DNA interactions at individual loci using light and sequencing, and reveals widespread and potent modulation of UV damage in regulatory regions.
Journal
over1year
Expression of DDB1 is associated with subtypes of epithelial ovarian cancer and predicts clinical outcomes. (PubMed, Tissue Cell)
Our results revealed that DDB1 expression is heterogeneous in ovarian cancer, suggesting its use as a potential biomarker for poor survival in ovarian cancer.
Clinical data • Journal
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DDB1 (Damage Specific DNA Binding Protein 1)
over1year
ATF4 Transcriptionally Activates SHH to Promote Proliferation, Invasion, and Migration of Gastric Cancer Cells. (PubMed, Cancers (Basel))
Mechanistically, rescue assays showed that ATF4 regulated gastric cancer cells' proliferation and invasive ability through SHH. Similarly, ATF4 enhanced the tumor formation of GC cells in a xenograft model.
Journal
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ATF4 (Activating Transcription Factor 4)
over1year
Implications of miRNAs dysregulation in amyotrophic lateral sclerosis: Challenging for clinical applications. (PubMed, Front Neurosci)
The identification and validation of miRNAs are important to understand the physiological gene regulation in the CNS, and the pathological implications in ALS, leading to a new avenue for early diagnosis and gene therapies. Here, we offer a recent overview regarding the mechanism underlying the functions of multiple miRNAs across TDP-43, FUS, and SOD1 with the context of cell biology, and challenging for clinical applications in ALS.
Review • Journal
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TARDBP (TAR DNA Binding Protein) • FUS (FUS RNA Binding Protein) • SOD1 (Superoxide Dismutase 1)
over1year
lncRNA NEAT1: key player in neurodegenerative diseases. (PubMed, Ageing Res Rev)
This review summarizes our current knowledge of the role of NEAT1 in neurodegenerative diseases and its association with the characteristic aggregation of misfolded proteins: amyloid-β and tau in AD, α-synuclein in PD, mutant huntingtin in HD, and TAR DNA-binding protein-43 fused in sarcoma/translocated in liposarcoma in ALS. The aim of this review is to stimulate further research on more precise and effective treatments for neurodegenerative diseases.
Review • Journal
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NEAT1 (Nuclear Paraspeckle Assembly Transcript 1) • TARDBP (TAR DNA Binding Protein)
over1year
CHD1 deletion stabilizes HIF1α to promote angiogenesis and glycolysis in prostate cancer. (PubMed, Asian J Androl)
Functional analysis showed that CHD1 deletion promoted angiogenesis and glycolysis, possibly through HIF1α target genes. Taken together, these findings indicate that CHD1 deletion enhances HIF1α expression through PHD2 downregulation and therefore promotes angiogenesis and metabolic reprogramming in PCa.
Journal
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HIF1A (Hypoxia inducible factor 1, alpha subunit) • VHL (von Hippel-Lindau tumor suppressor) • CHD1 (Chromodomain Helicase DNA Binding Protein 1)
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CHD1 deletion • HIF1A expression
over1year
Epigenetic control of cancer cell proliferation and cell cycle progression by HNRNPK via promoting exon 4 inclusion of histone code reader SPIN1. (PubMed, J Mol Biol)
In addition, we discovered that HNRNPK promoted SPIN1 exon 4 inclusion by interacting with an intronic splicing enhancer in intron 4. Collectively, our study suggests a novel epigenetic regulatory pathway of HNRNPK in OSCC, mediated by controlling the transcription activity and alternative splicing of SPIN1 gene.
Journal • Epigenetic controller
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CCND1 (Cyclin D1) • HNRNPK (Heterogeneous Nuclear Ribonucleoprotein K)
over1year
Compartment specific mitochondrial dysfunction in Drosophila knock-in model of ALS reversed by altered gene expression of OXPHOS subunits and pro-fission factor Drp1. (PubMed, Mol Cell Neurosci)
The decrease in networked mitochondria at the synapse is reversed upon downregulation of the pro-fission factor Drp1. Furthermore, altered expression of specific OXPHOS subunits reverses ALS-associated defects in mitochondrial morphology and function.
Journal
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TARDBP (TAR DNA Binding Protein) • FUS (FUS RNA Binding Protein) • SOD1 (Superoxide Dismutase 1)
over1year
HSPB8 frameshift mutant aggregates weaken chaperone-assisted selective autophagy in neuromyopathies. (PubMed, Autophagy)
HSPB8_fs mutants aggregation alters the differentiation capacity of muscle cells and impairs sarcomere organization. Collectively, these results shed light on a potential pathogenic mechanism shared by the HSPB8_fs mutants described in neuromuscular diseases.Abbreviations : ACD: α-crystallin domain; ACTN: actinin alpha; BAG3: BAG cochaperone 3; C: carboxy; CASA: chaperone-assisted selective autophagy; CE: carboxy-terminal extension; CLEM: correlative light and electron microscopy; CMT2L: Charcot-Marie-Tooth type 2L; CTR: carboxy-terminal region; dHMNII: distal hereditary motor neuropathy type II; EV: empty vector; FRA: filter retardation assay; fs: frameshift; HSPA/HSP70: heat shock protein family A (Hsp70); HSPB1/Hsp27: heat shock protein family B (small) member 1; HSPB8/Hsp22: heat shock protein family B (small) member 8; HTT: huntingtin; KO: knockout; MAP1LC3B/LC3: microtubule associated protein 1 light chain 3 beta; MD: molecular dynamics; MTOC: microtubule organizing center; MYH: myosin heavy chain; MYOG: myogenin; NBR1: NBR1 autophagy cargo receptor; CALCOCO2/NDP52: calcium binding and coiled-coil domain 2; NSC34: Neuroblastoma X Spinal Cord 34; OPTN: optineurin; polyQ: polyglutamine; SQSTM1/p62: sequestosome 1; STUB1/CHIP: STIP1 homology and U-box containing protein 1; TARDBP/TDP-43: TAR DNA binding protein; TAX1BP1: Tax1 binding protein 1; TUBA: tubulin alpha; WT: wild-type.
Journal
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SQSTM1 (Sequestosome 1) • TARDBP (TAR DNA Binding Protein) • MUTYH (MutY homolog) • HSPB1 (Heat shock 27kDa protein 1) • MAP1LC3B (Microtubule Associated Protein 1 Light Chain 3 Beta) • OPTN (Optineurin)
over1year
Association of Kaiso and partner proteins in oral squamous cell carcinoma. (PubMed, J Taibah Univ Med Sci)
The present study identified a change in the localization of Kaiso in OC. The significance of this in relation to OC and tumor prognosis needs to be investigated with further studies using larger sample sizes and more sensitive molecular tools.
Journal
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MYC (V-myc avian myelocytomatosis viral oncogene homolog) • CCND1 (Cyclin D1) • CDH1 (Cadherin 1) • CTNND1 (Catenin Delta 1)
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MYC expression • CCND1 expression • CDH1 expression
over1year
Differential Expression of AP-2 Transcription Factors Family in Lung Adenocarcinoma and Lung Squamous Cell Carcinoma-A Bioinformatics Study. (PubMed, Cells)
In addition, to assess the difference in levels depending on a number of clinicopathological factors, the impact on patient survival and interactions with tumor-infiltrating immune cells. This article may help to identify the target for further original research that may contribute to the discovery of new diagnostic biomarkers and define the molecular differences between LUAD and LUSC, which may affect the therapy effectiveness improvement and longer survival.
Journal
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TFAP2A (Transcription Factor AP-2 Alpha) • TFAP2C (Transcription Factor AP-2 Gamma)
almost2years
How can we interpret the relationship between liquid-liquid phase separation and amyotrophic lateral sclerosis? (PubMed, Lab Invest)
In addition to the inclusion body formation, sequestration of essential proteins into the LLPS droplets or changes in the LLPS status can directly impair neural functions and cause diseases. In this review, we will discuss the relationship between the LLPS observed in ALS causative proteins and the pathogenesis of the disease and outline potential therapeutic approaches.
Review • Journal
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TARDBP (TAR DNA Binding Protein) • FUS (FUS RNA Binding Protein) • SOD1 (Superoxide Dismutase 1)
almost2years
PIN1 and PIN4 inhibition via parvulin impeders Juglone, PiB, ATRA, 6,7,4'-THIF, KPT6566, and EGCG thwarted hepatitis B virus replication. (PubMed, Front Microbiol)
Thus, PIN1 and PIN4 inhibition or knockdown might be novel therapeutic targets to suppress HBV infection. targets to suppress HBV infection.
Journal
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PIN1 (Peptidylprolyl Cis/Trans Isomerase, NIMA-Interacting 1)
almost2years
Lessons learned from a sporadic FUSopathy in a young man: a case report. (PubMed, BMC Neurol)
In patients affected by FTD, particularly the youngest, with rapidly progressive decline and early motor affection, fusopathy must be suspected. These cases can include motor signs described in the FTD spectrum. Lower motor neuron affection in EMG could be detected late.
Journal
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TARDBP (TAR DNA Binding Protein) • FUS (FUS RNA Binding Protein)
almost2years
The epigenetic factor CHD4 contributes to metastasis by regulating the EZH2/β-catenin axis and acts as a therapeutic target in ovarian cancer. (PubMed, J Transl Med)
Collectively, our results uncovered an oncogenic function of CHD4 in ovarian cancer and provide a rationale for clinical trials of romidepsin in ovarian cancer patients.
Journal
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EZH2 (Enhancer of zeste 2 polycomb repressive complex 2 subunit) • CTNNB1 (Catenin (cadherin-associated protein), beta 1) • CHD4 (Chromodomain Helicase DNA Binding Protein 4)
|
Istodax (romidepsin)
almost2years
The miRNA125a-5p and miRNA125b-1-5p cluster induces cell invasion by down-regulating DDB2-reduced epithelial-to-mesenchymal transition (EMT) in colorectal cancer. (PubMed, J Gastrointest Oncol)
Our findings illustrated that miRNA125a-5p and miRNA125b-1-5p could reduce the expression of DDB2 by binding to the 3'UTR region, and then regulate the expression levels of EMT markers, leading to the enhanced invasion and metastasis of colorectal cancer cells. Thus, miRNA125a-5p and miRNA125b-1-5p might be novel markers of colorectal cancer migration and potential therapeutic targets to treat metastatic colorectal cancer patients.
Journal
|
DDB2 (Damage Specific DNA Binding Protein 2) • MIR125A (MicroRNA 125a)
almost2years
The hsa_circ_0007396-miR-767-3p-CHD4 axis is involved in the progression and carcinogenesis of gastric cancer. (PubMed, J Gastrointest Oncol)
Therefore, CHD4 may provide a promising therapeutic target for the future treatment of GC. We identified an important hsa_circ_0007396-miR-767-3p-CHD4 axis, which is associated with GC proliferation and carcinogenesis, and may represent a promising therapeutic target for the future cure of GC.
Journal
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CHD4 (Chromodomain Helicase DNA Binding Protein 4)
almost2years
Signaling pathways and regulation of gene expression in hematopoietic cells. (PubMed, Adv Biol Regul)
Thus, the interplay between CK2 and PP1 signaling pathways have opposing effects on the phosphorylation status of their mutual substrate - IKAROS. This review summarizes the effects of CK2 and PP1 on IKAROS role in regulation of gene expression and its function as a tumor suppressor in leukemia.
Review • Journal
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IKZF1 (IKAROS Family Zinc Finger 1)
|
silmitasertib (CX-4945)
almost2years
CHD4 promotes acquired chemoresistance and tumor progression by activating the MEK/ERK axis. (PubMed, Drug Resist Updat)
This study identifies CHD4 dominated multi-drug efflux as a promising therapeutic target for overcoming acquired chemoresistance in GC.
Journal
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MAP2K1 (Mitogen-activated protein kinase kinase 1) • CHD4 (Chromodomain Helicase DNA Binding Protein 4)
|
cisplatin
almost2years
Cell-based cccDNA reporter assay combined with functional genomics identifies YBX1 as HBV cccDNA host factor and antiviral candidate target. (PubMed, Gut)
Our cell-based reporter assay enables the discovery of HBV cccDNA host factors including YBX1 and is suitable for the characterisation of cccDNA-related host factors, antiviral targets and compounds.
Journal
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YBX1 (Y-Box Binding Protein 1)