^
Contact us  to learn more about
our Premium Content:  News alerts, weekly reports and conference planners
BIOMARKER:

Chr del(7q)

Related tests:
1m
Data-driven, harmonised classification system for myelodysplastic syndromes: a consensus paper from the International Consortium for Myelodysplastic Syndromes. (PubMed, Lancet Haematol)
After the survey, myelodysplastic syndromes with low blasts (ie, less than 5%) and myelodysplastic syndromes with increased blasts (ie, 5% or more) were recognised as disease entities. Our data-driven approach can efficiently harmonise current classifications of myelodysplastic syndromes and provide a reference for patient management in a real-world setting.
Review • Journal
|
TP53 (Tumor protein P53) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1)
|
TP53 mutation • RUNX1 mutation • Chr del(5q) • Chr del(7q)
8ms
Rare NUP98::PRRX1 fusion transcript in a therapy-related acute myeloid leukemia associated with del(7q) following chemotherapy for diffuse large B-cell lymphoma. (PubMed, Cancer Genet)
Novel targeted drugs may provide opportunities for patients with NUP98::PRRX1 to undergo allo-HSCT. However, since the cases of carrying the NUP98::PRRX1 are limited, more patients with this genetic change need to be investigated to elucidate the prognostic significance.
Journal • IO biomarker
|
KRAS (KRAS proto-oncogene GTPase) • NUP98 (Nucleoporin 98 And 96 Precursor 2) • PRRX1 (Paired Related Homeobox 1)
|
KRAS mutation • Chr del(7q)
8ms
Sirolimus and Azacitidine in Treating Patients With High Risk Myelodysplastic Syndrome or Acute Myeloid Leukemia That is Recurrent or Not Eligible for Intensive Chemotherapy (clinicaltrials.gov)
P2, N=57, Active, not recruiting, Sidney Kimmel Cancer Center at Thomas Jefferson University | Trial completion date: Dec 2023 --> Apr 2028 | Trial primary completion date: Dec 2023 --> Apr 2028
Trial completion date • Trial primary completion date
|
Chr del(7q)
|
azacitidine • sirolimus
9ms
5G2 mutant mice model loss of a commonly deleted segment of chromosome 7q22 in myeloid malignancies. (PubMed, Leukemia)
Whereas alkylator exposure modestly accelerated tumor development, the 5G2 deletion did not cooperate with KrasG12D, NrasG12D, or the MOL4070LTR retrovirus in leukemogenesis. 5G2+/del mice are a novel platform for interrogating the role of hemopoietic stem cell attrition/stress, cooperating mutations, genotoxins, and inflammation in myeloid malignancies characterized by monosomy 7/del(7q).
Preclinical • Journal
|
KRAS (KRAS proto-oncogene GTPase) • CUX1 (cut like homeobox 1)
|
KRAS G12D • KRAS G12 • NRAS G12 • Chr del(7q) • KRAS deletion
9ms
Myelodysplasia-related gene mutations are associated with favorable prognosis in patients with TP53-mutant acute myeloid leukemia. (PubMed, Ann Hematol)
The complete response rates for intensive chemotherapy (IC), hypomethylating agent (HMAs)-based therapies, and azacitidine plus venetoclax were 35.7%, 22.2%, and 37.5%, respectively. In conclusion, patients with TP53-mutant AML have poor prognoses under current treatment strategies and MR gene mutations are associated with a more favorable survival. Therefore, further studies are needed to improve the survival rates in this population.
Journal
|
TP53 (Tumor protein P53)
|
TP53 mutation • Chr del(5q) • Chr del(7q)
|
Venclexta (venetoclax) • azacitidine
11ms
Monosomy 7/del(7q) Cause Sensitivity to Inhibitors of Nicotinamide Phosphoribosyltransferase in Acute Myeloid Leukemia. (PubMed, Blood Adv)
Furthermore, the combination of the BCL2 inhibitor venetoclax and the NAMPT inhibitor KPT-9274 resulted in the death of significantly more leukemic blasts in AML samples with -7/-7q compared to the NAMPT inhibitor alone. In conclusion, our findings demonstrate that AML with -7/-7q are highly sensitive to NAMPT inhibition, suggesting that NAMPT inhibitors have the potential to be an effective targeted therapy for patients with monosomy 7 or del(7q).
Journal • IO biomarker
|
CD34 (CD34 molecule) • NAMPT (Nicotinamide Phosphoribosyltransferase)
|
Chr del(7q)
|
Venclexta (venetoclax) • padnarsertib (KPT-9274)
11ms
Trial completion date • Trial primary completion date
|
RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • SRSF2 (Serine and arginine rich splicing factor 2) • BCOR (BCL6 Corepressor) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1) • STAG2 (Stromal Antigen 2) • ZRSR2 (Zinc Finger CCCH-Type, RNA Binding Motif And Serine/Arginine Rich 2)
|
Chr del(11q) • U2AF1 mutation • Chr del(7q)
|
Vyxeos (cytarabine/daunorubicin liposomal formulation) • pomalidomide
11ms
The der(1;7)(q10;p10) defining a distinct profile from -7/del(7q) in myelodysplastic syndromes: A systematic review and meta-analysis. (PubMed, Cancer Med)
The findings revealed distinct clinical, cytogenetic, and molecular characteristics distinguishing der(1;7) from -7/del(7q), indicating der(1;7) defines a unique subtype within MDS with monosomy 7q. These findings support classifying der(1;7) as a separate MDS entity in future.
Retrospective data • Review • Journal
|
TP53 (Tumor protein P53) • RUNX1 (RUNX Family Transcription Factor 1) • ETNK1 (Ethanolamine Kinase 1)
|
TP53 mutation • Chr del(5q) • Chr del(7q)
11ms
Pulmonary infection associated with immune dysfunction is associated with poor prognosis in patients with myelodysplastic syndrome accompanied by TP53 abnormalities. (PubMed, Front Oncol)
The complete response rates for azacitidine monotherapy, venetoclax combined with azacitidine, decitabine monotherapy, and decitabine combined with low-dose chemotherapy were 9.1%, 41.7%, 37.5%, and 33.3%, respectively. In conclusion, TP53 abnormalities in patients with MDS were frequently accompanied by complex karyotypes, and treatments based on hypomethylating agents or venetoclax have limited efficacy. Pulmonary infections associated with immune dysfunction is associated with poor prognosis.
Journal
|
TP53 (Tumor protein P53) • CD8 (cluster of differentiation 8) • CD4 (CD4 Molecule)
|
Chr del(5q) • Chr del(7q)
|
Venclexta (venetoclax) • azacitidine • decitabine
11ms
Cytogenetics in the management of myelodysplastic neoplasms (myelodysplastic syndromes, MDS): Guidelines from the groupe francophone de cytogénétique hématologique (GFCH). (PubMed, Curr Res Transl Med)
A karyotype on bone marrow remains mandatory at diagnosis of MDS with complementary molecular analyses now required. Analyses with FISH or other technologies providing similar information can be necessary to complete and help in case of karyotype failure, for doubtful CA, for clonality assessment, and for detection of TP53 deletion to assess TP53 biallelic alterations.
Clinical guideline
|
TP53 (Tumor protein P53)
|
TP53 deletion • Chr del(5q) • Chr del(7q)
12ms
New P2 trial
|
TP53 (Tumor protein P53) • AFDN (Afadin, Adherens Junction Formation Factor)
|
TP53 mutation • Chr del(17p) • TP53 wild-type • Chr del(7q) • Chr t(4;11)(q21;q23) • Chr t(9;11)
|
cytarabine • azacitidine • Epidaza (chidamide) • daunorubicin • Synribo (omacetaxine mepesuccinate)
1year
Comparison of the Revised 4 Th (2016) and 5 Th (2022) Editions of the World Health Organization (WHO) Classification in a Cohort of Patients with Lower-Risk Myelodysplastic Syndromes/Neoplasms (MDS) – a Glam Registry (REGLAM) Analysis (ASH 2023)
Our study, to our knowledge, provides one of the first, if not the first, datasets from LMIC to describe characteristics of IPSS-R lower-risk MDS pts and their re-classification and corresponding survival according to the WHO 2016 and 2022 classifications. Limited availability of molecular analysis in real-life settings (e.g., TP53 mutations) highlights some of the challenges of using the 2022 WHO classification (as well as IPSS-M) LMIC. Understanding the epidemiology of MDS pts in LMIC is important especially as some of the newly approved agents for lower risk MDS are starting to be used in these countries.
Clinical
|
TP53 (Tumor protein P53) • SF3B1 (Splicing Factor 3b Subunit 1)
|
TP53 mutation • SF3B1 mutation • Chr del(5q) • Chr del(7q)
1year
Influence of Co-Mutational Patterns in Disease Phenotype and Clinical Outcomes of Chronic Myelomonocytic Leukemia (ASH 2023)
These data suggest that somatic mutations in CMML have unique patterns of clustering that define disease phenotype and influence disease outcomes.
Clinical • Clinical data
|
KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • ETV6 (ETS Variant Transcription Factor 6) • SRSF2 (Serine and arginine rich splicing factor 2) • WT1 (WT1 Transcription Factor) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1) • CEBPA (CCAAT Enhancer Binding Protein Alpha) • SETBP1 (SET Binding Protein 1) • BCORL1 (BCL6 Corepressor Like 1)
|
TP53 mutation • BRAF mutation • NRAS mutation • DNMT3A mutation • RUNX1 mutation • ASXL1 mutation • TET2 mutation • EZH2 mutation • CBL mutation • SRSF2 mutation • U2AF1 mutation • CEBPA mutation • WT1 mutation • Chr del(7q) • ETV6 mutation
1year
The Proliferative History Index, Epicmit, Derived from Genome-Wide Epigenomic Profiling, Is a Key Driver of Clinical Survival in Splenic Marginal Zone Lymphoma (ASH 2023)
We then conducted univariate Cox Proportional Hazards analysis to investigate the prognostic significance of clinical and molecular features on time to first treatment (TTFT; most prevalent treatments: splenectomy, n=51; rituximab, n=20) and overall survival (OS)...To conclude, we demonstrate the potential clinical utility of epiCMIT score in SMZL patients, identifying that SMZL patients with high epiCMIT harbour specific genetic characteristics, and exhibit reduced treatment-free survival. EpiCMIT could be valuable in clinical practice, helping to identify those patients destined to progress and require closer monitoring.
Clinical • Tumor mutational burden
|
TP53 (Tumor protein P53) • TMB (Tumor Mutational Burden) • MAP2K1 (Mitogen-activated protein kinase kinase 1) • KMT2D (Lysine Methyltransferase 2D) • NOTCH2 (Notch 2) • BCOR (BCL6 Corepressor) • CARD11 (Caspase Recruitment Domain Family Member 11) • MIR155 (MicroRNA 155) • NFKB1 (Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1)
|
TP53 mutation • NOTCH2 mutation • Chr del(7q)
|
Rituxan (rituximab)
1year
Molecular Taxonomy of Myelodysplastic Syndromes and Its Clinical Implications (ASH 2023)
The prognostic influence of bone marrow blasts varied in the individual genetic subgroups, suggesting that the clinical impact of increased blasts depends on the genetic context. The molecular taxonomy derived in this study is clinically relevant and will inform future classification schemas.
Clinical
|
TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3) • IDH1 (Isocitrate dehydrogenase (NADP(+)) 1) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • SRSF2 (Serine and arginine rich splicing factor 2) • WT1 (WT1 Transcription Factor) • BCOR (BCL6 Corepressor) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1) • STAG2 (Stromal Antigen 2) • SETBP1 (SET Binding Protein 1) • DDX41 (DEAD-Box Helicase 41) • ZRSR2 (Zinc Finger CCCH-Type, RNA Binding Motif And Serine/Arginine Rich 2) • BCORL1 (BCL6 Corepressor Like 1)
|
TP53 mutation • TET2 mutation • U2AF1 mutation • Chr del(5q) • Chr del(7q) • TET2 deletion
1year
Data-Driven Harmonization of 2022 Who and ICC Classifications of Myelodysplastic Syndromes/Neoplasms (MDS): A Study By the International Consortium for MDS (icMDS) (ASH 2023)
Table 2 shows a provisional, hierarchical classification algorithm. Further refinement of entity labels and classification criteria is the subject of the ongoing modified Delphi Process consensus approach among icMDS experts.
TP53 (Tumor protein P53) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • SRSF2 (Serine and arginine rich splicing factor 2) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1) • CEBPA (CCAAT Enhancer Binding Protein Alpha)
|
TP53 mutation • NPM1 mutation • DNMT3A mutation • RUNX1 mutation • ASXL1 mutation • TET2 mutation • SF3B1 mutation • SRSF2 mutation • U2AF1 mutation • CEBPA mutation • Chr del(5q) • Chr del(7q)
1year
Clinical, Cytogenetic and Immunophenotypic Spectra of Post-Transplant Relapse Following Allogeneic Hematopoietic Stem Cell Transplantation for Myelodysplastic Syndrome (ASH 2023)
Post-HCT relapse treatments included hypomethylating agents (HMA; n=13/46, 28%), HMA with donor lymphocyte infusion (DLI; n= 7/46, 15%), HMA with Venetoclax (VEN; n=7/46, 15%), chemotherapy (n=9/46, 19%), best supportive care (8/46, 17%) and second HCT (n=2/46, 4%)...The relapsed disease often shows evidence of clonal evolution in its immunophenotype and/or cytogenetic profile toward a more aggressive disease. Approaches to post-HCT relapse remain heterogenous but HMA is beneficial.
Clinical • Post-transplantation
|
KIT (KIT proto-oncogene, receptor tyrosine kinase) • CD34 (CD34 molecule) • CD7 (CD7 Molecule)
|
Chr del(5q) • Chr del(7q)
|
Venclexta (venetoclax)
1year
Impact of Typical and Atypical Complex Karyotype Subgroups on Outcome of AML Patients Undergoing Allogeneic Stem Cell Transplantation (ASH 2023)
Within pts with a CKT receiving HSCT, we identified additional prognostic factors including the presence of ≥5 cytogenetic aberrations. These pts are in urgent need for novel post HSCT approaches.
Clinical • IO biomarker
|
TP53 (Tumor protein P53) • RUNX1 (RUNX Family Transcription Factor 1) • CD38 (CD38 Molecule) • CD34 (CD34 molecule) • ADGRG1 (Adhesion G Protein-Coupled Receptor G1)
|
TP53 mutation • RUNX1 mutation • Chr del(5q) • LDH-L • Chr del(7q)
1year
Modification of the ELN Classification 2022 Refines Risk Assessment in MDS/AML Patients (ASH 2023)
For MDS/AML patients, AML-based risk classification according to ELN 2022 guidelines is not applicable as the vast majority of cases are categorized into the adverse risk group based on mutations in splicing factor genes and other secondary-type mutations. Modification of the ELN risk categories reflects the partly MDS-based biology of the disease and substantially improves the prognostic stratification. Most importantly, patients with adverse outcome potentially benefitting from inclusion into clinical trials for novel substances are identified.
Clinical
|
TP53 (Tumor protein P53) • EZH2 (Enhancer of zeste 2 polycomb repressive complex 2 subunit) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • SRSF2 (Serine and arginine rich splicing factor 2) • BCOR (BCL6 Corepressor) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1) • STAG2 (Stromal Antigen 2) • ZRSR2 (Zinc Finger CCCH-Type, RNA Binding Motif And Serine/Arginine Rich 2)
|
TP53 mutation • RUNX1 mutation • ASXL1 mutation • TET2 mutation • SF3B1 mutation • EZH2 mutation • SRSF2 mutation • U2AF1 mutation • Chr del(5q) • STAG2 mutation • Chr del(7q)
1year
Genomic Characterization of Acute Myeloid Leukemia with Aberrations of Chromosome 7: A Multinational Cohort of 523 Patients (ASH 2023)
Our results offer novel insights into the genomic landscape and clonal trajectory of AML with abn(7). This work unravels formerly underestimated genetic lesions (KMT2Cmut) and alterations with high prognostic impact (abnTP53 and IDH2mut) for better future risk stratification.
Clinical
|
KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • DNMT3A (DNA methyltransferase 1) • NF1 (Neurofibromin 1) • RUNX1 (RUNX Family Transcription Factor 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • ETV6 (ETS Variant Transcription Factor 6) • KMT2C (Lysine Methyltransferase 2C) • FAT1 (FAT atypical cadherin 1) • CUX1 (cut like homeobox 1) • TACC2 (Transforming Acidic Coiled-Coil Containing Protein 2)
|
TP53 mutation • KRAS mutation • BRAF mutation • FLT3 mutation • TP53 wild-type • KMT2C mutation • Chr del(7q) • MLL3 mutation
1year
CD8 Depleted, Non-engrafting, HLA Mismatched Unrelated Infusion With MDS and Secondary AML (clinicaltrials.gov)
P1/2, N=19, Active, not recruiting, H. Lee Moffitt Cancer Center and Research Institute | Recruiting --> Active, not recruiting | N=28 --> 19 | Trial completion date: Dec 2024 --> Aug 2024 | Trial primary completion date: Dec 2023 --> Aug 2024
Enrollment closed • Enrollment change • Trial completion date • Trial primary completion date
|
JAK2 (Janus kinase 2) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • SRSF2 (Serine and arginine rich splicing factor 2) • BCOR (BCL6 Corepressor) • U2AF1 (U2 Small Nuclear RNA Auxiliary Factor 1) • STAG2 (Stromal Antigen 2) • CALR (Calreticulin) • CDKN1A (Cyclin-dependent kinase inhibitor 1A) • ZRSR2 (Zinc Finger CCCH-Type, RNA Binding Motif And Serine/Arginine Rich 2)
|
TP53 mutation • Chr del(11q) • U2AF1 mutation • Chr del(5q) • Chr del(7q)
|
cytarabine
1year
Association of Leukocyte Counts With Somatic Mutations and Immunophenotype of Tumor Cells in Acute Myeloid Leukemia (AML) (SOHO 2023)
Contrary to the immunophenotype, the genetic profile in AML is significantly associated with a high/low number of leukocytes. The highest leukocyte counts were followed by a combination of epigenetic and driver mutations (DNMT3A/TET2/IDH1/2 plus NPM1/ FLT3/CEBPA) in both intermediate and unfavorable risk groups. We have also shown that patients' driver mutations (NPM1/FLT3/ CEBPA) are characterized by an immunologically more mature immunophenotype (CD34-) of the tumor clone.
Tumor cell
|
FLT3 (Fms-related tyrosine kinase 3) • KIT (KIT proto-oncogene, receptor tyrosine kinase) • IDH1 (Isocitrate dehydrogenase (NADP(+)) 1) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • CD33 (CD33 Molecule) • CD34 (CD34 molecule) • CEBPA (CCAAT Enhancer Binding Protein Alpha) • ANPEP (Alanyl Aminopeptidase, Membrane)
|
FLT3 mutation • NPM1 mutation • DNMT3A mutation • TET2 mutation • CEBPA mutation • Chr del(5q) • Chr del(7q) • DNMT3A mutation + IDH mutation
over1year
Real-world practice-based prognostic model for higher-risk myelodysplastic syndromes treated with azacitidine monotherapy: The Kyoto prognostic scoring system. (PubMed, Int J Hematol)
The discriminatory power of the KPSS was higher than that of the traditional International Prognostic Scoring System. In conclusion, we identified several nutritional parameters with prognostic relevance in patients with HR-MDS and generated a prognostic model consisting of complex karyotype and serum T-cho level that enabled excellent risk stratification.
Retrospective data • Journal • Real-world evidence • Real-world
|
Chr del(7q)
|
azacitidine
over1year
Hematopoietic Cell Transplantation for Patients With Hematologic Malignancies Using Related, HLA-Haploidentical Donors (clinicaltrials.gov)
P2, N=20, Recruiting, European Institute of Oncology | Trial completion date: Dec 2022 --> Dec 2023 | Trial primary completion date: Dec 2022 --> Dec 2023
Trial completion date • Trial primary completion date
|
Chr del(5q) • Chr del(7q)
|
cyclophosphamide
over1year
Cytogenetic Characteristics of de novo Acute Myeloid Leukemia in Southern Vietnam. (PubMed, Asian Pac J Cancer Prev)
In conclusion, this is the first comprehensive cytogenetic profile of Vietnamese patients diagnosed with de novo AML, which helps clinical doctors in prognostic classification for AML patients in Southern Vietnam.
Journal
|
Chr del(5q) • Chr del(7q) • Chr t(15;17)
over1year
CYTOPENIAS, AGE AND CAR-HEMATOTOX SCORE PREDICT THE DEVELOPMENT OF POST CAR T-CELL THERAPY-RELATED MYELOID NEOPLASMS (EHA 2023)
A model incorporating CHS and age stratifies t-MN risk post CAR-T cell therapy for MM/HGBCL, with age and thrombocytopenia independently predicting t-MN risk. Clinical stratification of t-MN risk prior to CAR T-cell therapy may identify a subgroup of patients most likely to benefit from additional screening and closer surveillance. Therapy-related AML, CAR-T, MDS, Hematotoxicity
CAR T-Cell Therapy • IO biomarker
|
TP53 (Tumor protein P53)
|
TP53 mutation • Chr del(7q)
over1year
GENOMIC LANDSCAPE AND PROGNOSIS IN OLDER ACUTE MYELOID LEUKEMIA PATIENTS NOT ELIGIBLE FOR INTENSIVE CHEMOTHERAPY (EHA 2023)
Targeted sequencing of 263 genes was performed in 604 patients enrolled in the randomized, multi-center phase 3 'ASTRAL-1' trial (NCT02348489) evaluating the second-generation hypomethylating agent guadecitabine (SGI- 110) in treatment-naïve AML pts not eligible for intensive chemotherapy in comparison to a treatment choice of decitabine, azacitidine, or low-dose cytarabine. Using different modelling algorithms, our comprehensive analysis of the so far largest study in older, treatmentnaïve AML patients identified distinct trajectories of leukemia development, provided support for AML with mutated DDX41 as a new clinico-pathologic entity and a basis for the development of a risk stratification that may be applicable for the numerous older patients receiving less intensive therapies. Tumorigenesis, Age, AML, Prognostic groups
Clinical
|
TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3) • NPM1 (Nucleophosmin 1) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • ASXL1 (ASXL Transcriptional Regulator 1) • TET2 (Tet Methylcytosine Dioxygenase 2) • SRSF2 (Serine and arginine rich splicing factor 2) • DDX41 (DEAD-Box Helicase 41)
|
TP53 mutation • NPM1 mutation • DNMT3A mutation • ASXL1 mutation • TET2 mutation • SRSF2 mutation • Chr del(5q) • DDX41 mutation • Chr del(7q)
|
cytarabine • azacitidine • guadecitabine (SGI-110)
over1year
Pathophysiology of progression of Fanconi anemia to MDS/AML (MDS 2023)
Importantly, our comprehensive analysis suggests that timely staging and treatment, including using potential targeted therapy, should improve the care of FA patients. Beyond FA, this oncogenic sequence as highlighted in our work, i.e. clonal hematopoiesis that attenuates the p53 response, followed by additional oncogenic events leading to MDS/AML, can also be found in other “stressed hematopoiesis” conditions such as post-BMF, MDS, MPN and post-therapy leukemia, as a general canonic route leading to secondary leukemia 3,4,5.
BRCA Biomarker
|
BRCA (Breast cancer early onset) • MDM4 (The mouse double minute 4)
|
TP53 expression • BRCA mutation • Chr del(7q)
over1year
Oncogenic RAS promotes leukemic transformation of CUX1-deficient cells. (PubMed, Oncogene)
Similarly, low expression of CUX1 in primary AML samples correlates with sensitivity to the same inhibitors, suggesting a potential therapy for malignancies with CUX1 inactivation. This work demonstrates an unexpected convergence of an oncogene and tumor suppressor gene on the same pathway.
Journal
|
NRAS (Neuroblastoma RAS viral oncogene homolog) • CUX1 (cut like homeobox 1)
|
RAS mutation • Chr del(7q) • CUX1 mutation
over1year
Analysis of clinical and genomic profiles of therapy-related myeloid neoplasm in Korea. (PubMed, Hum Genomics)
The findings of our study corroborate important information about T-MN patients. As well as a considerable predisposition to CPG, the clinical characteristics and somatic variant profile showed distinctive patterns. Germline variant testing should be recommended for T-MN patients. If the T-MN patients harbor pathogenic germline variants, the family members for stem cell donation should be screened for carrier status through germline variant testing to avoid donor-derived myeloid neoplasm. For the prediction of the prognosis in T-MN patients, sex, age, past treatment history, and cytogenetic findings can be considered.
Journal
|
TP53 (Tumor protein P53) • NF1 (Neurofibromin 1) • RUNX1 (RUNX Family Transcription Factor 1) • BRIP1 (BRCA1 Interacting Protein C-terminal Helicase 1) • CEBPA (CCAAT Enhancer Binding Protein Alpha) • DDX41 (DEAD-Box Helicase 41) • NBN (Nibrin Nijmegen Breakage Syndrome 1 (Nibrin)) • FANCM (FA Complementation Group M)
|
Chr del(5q) • Chr del(7q)
almost2years
A RETROSPECTIVE STUDY ANALYZING THE OUTCOME OF HEMATOPOIETIC STEM CELL TRANSPLANTATION IN CHILDREN AND ADOLESCENTS WITH THERAPY-RELATED MYELODYSPLASTIC SYNDROME (EBMT 2023)
Following a preparative regimen with busulfan, cyclophosphamide and melphalan (63), or other busulfan-based (19), treosulfan-based (36) or alternative conditioning regimens (28) patients were transplanted from a MSD (46), an unrelated donor (95) or an HLA-haploidentical donor (4). HSCT resulted in a 5-year DFS of 48% in this high-risk group of 145 patients with t-MDS. Cytogenetics and gene mutation profiles had the strongest impact on outcome. Characterization of the genetic profile, including the identification of germline variants, will be required for informed treatment decisions and will help elucidate the pathogenesis of t-MDS.
Retrospective data
|
KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog) • RUNX1 (RUNX Family Transcription Factor 1) • ASXL1 (ASXL Transcriptional Regulator 1) • KMT2A (Lysine Methyltransferase 2A) • PTPN11 (Protein Tyrosine Phosphatase Non-Receptor Type 11)
|
TP53 mutation • KMT2A rearrangement • MLL rearrangement • Chr del(7q)
|
cyclophosphamide • melphalan • busulfan • Ovastat (treosulfan)
almost2years
3q26.2/MECOM Rearrangements by Pericentric Inv(3): Diagnostic Challenges and Clinicopathologic Features. (PubMed, Cancers (Basel))
Pericentric inv(3)s are often subtle/cryptic by chromosomal analysis. A reflex FISH analysis for MECOM-R is recommended in myeloid neoplasms showing -7/del(7q).
Journal
|
FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • RUNX1 (RUNX Family Transcription Factor 1) • SF3B1 (Splicing Factor 3b Subunit 1) • MECOM (MDS1 And EVI1 Complex Locus) • GATA2 (GATA Binding Protein 2)
|
SF3B1 mutation • Chr del(7q)
almost2years
Reduced-Intensity Conditioning Before Donor Stem Cell Transplant in Treating Patients With High-Risk Hematologic Malignancies (clinicaltrials.gov)
P2, N=62, Completed, Sidney Kimmel Cancer Center at Thomas Jefferson University | Recruiting --> Completed | Trial completion date: Sep 2022 --> Dec 2022
Trial completion • Trial completion date
|
TP53 (Tumor protein P53) • FLT3 (Fms-related tyrosine kinase 3)
|
TP53 deletion • Chr del(5q) • Chr del(7q)
|
cyclophosphamide • fludarabine IV • busulfan
almost2years
PPM1D Mutations in Patients with Hematolymphoid Neoplasms (USCAP 2023)
In conclusion, PPM1D mutations are frequently seen in both MN-pCT and non-MN-pCT. TP53 is the most frequent co-mutation in PPM1D-mutant MN-pCT cases, while high VAF of PPM1D is observed in cases without TP53 co-mutation, suggestive of an alternative pathway in the pathogenesis of MN-pCT. A large study is warranted to investigate the impacts of PPM1D variants in patients with MN-pCT and non-MN-pCT.
Clinical
|
DNMT3A (DNA methyltransferase 1) • SRSF2 (Serine and arginine rich splicing factor 2) • PPM1D (Protein Phosphatase Mg2+/Mn2+ Dependent 1D)
|
TP53 mutation • SRSF2 mutation • Chr del(5q) • PPM1D mutation • Chr del(7q)