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BIOMARKER:

Chr del(13)(q14)

almost2years
Genomic imbalances analysis provides new insight into prognostic factors in adult and pediatric T-ALL. (PubMed, Blood)
Genomic complexity, del(16)(p13)/CREBBP and gain at 6q27 involving MLLT4 maintained their significance in multivariate analysis for survival outcome. Our study thus demonstrated that whole genome analysis of imbalances provides new insights to refine risk stratification in T-ALL.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • RB1 (RB Transcriptional Corepressor 1) • NF1 (Neurofibromin 1) • ETV6 (ETS Variant Transcription Factor 6) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • CREBBP (CREB binding protein) • PTPN2 (Protein Tyrosine Phosphatase Non-Receptor Type 2) • CDKN1A (Cyclin-dependent kinase inhibitor 1A) • CDKN1B (Cyclin dependent kinase inhibitor 1B) • AFDN (Afadin, Adherens Junction Formation Factor) • CASP8AP2 (Caspase 8 Associated Protein 2) • SUZ12 (SUZ12 Polycomb Repressive Complex 2 Subunit) • RPL22 (Ribosomal Protein L22)
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Chr del(13)(q14)
2years
Clinicopathological and genetic landscape of plasmablastic lymphoma in Taiwan. (PubMed, Pathol Res Pract)
Deletion of chromosome 13q14 was frequent. The PBL cases in Taiwan showed recurrent mutations involving JAK-STAT, RAS-MAPK, epigenetic regulation, and NOTCH signaling pathways, findings similar to that from the West.
Journal
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KRAS (KRAS proto-oncogene GTPase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • MYC (V-myc avian myelocytomatosis viral oncogene homolog) • FGFR3 (Fibroblast growth factor receptor 3) • CD20 (Membrane Spanning 4-Domains A1) • CCND1 (Cyclin D1) • BCL6 (B-cell CLL/lymphoma 6) • STAT3 (Signal Transducer And Activator Of Transcription 3) • SDC1 (Syndecan 1) • CD79A (CD79a Molecule) • IRF4 (Interferon regulatory factor 4)
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KRAS mutation • NRAS mutation • MYC expression • MYC rearrangement • FGFR3 fusion • STAT3 mutation • Chr del(13)(q14)
2years
Whole-Genome Sequencing for Copy Number Abnormalities in Multiple Myeloma Supersedes Karyotype Analysis and Fluorescent in Situ Hybridization (ASH 2023)
ConclusionsLeukoPrint is an automated, convenient and cost-effective approach to depict CNA profile in genomic DNA or cfDNA. This method is superior to conventional approaches when used for CNA testing, and the practice of this method could improve prognostic stratification of MM patients.
Whole genome sequencing
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SDC1 (Syndecan 1)
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Chr del(13)(q14) • Chr del(1p)
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LeukoPrint®
2years
Bone Marrow Plasma Cell Infiltration Is a Prognostic Factor for Response to AL Amyloidosis Therapy (ASH 2023)
In a low risk population defined by <10% BMPC, patients treated with HD melphalan did not show a statistical PFS difference when compared to patients treated without ASCT.
CD38 (CD38 Molecule)
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Chr del(13)(q14)
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melphalan
over2years
Cytogenomic features of Richter transformation. (PubMed, Mol Cytogenet)
Cytogenomic profile was concordant with the literature data, however the role of IGH rearrangement, 14q deletion and 5q35.2 gain need to be explored. We anticipate that further characterization of RT lesions will probably facilitate better understanding of the RT clonal evolution.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • NOTCH1 (Notch 1)
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CDKN2A deletion • MYC rearrangement • Chr del(13)(q14)
over2years
Genomic and Transcriptomic Profiles of Blastoid and Pleomorphic Mantle Cell Lymphoma Are Distinct from Classic Histology Mantle Cell Lymphoma (ASH 2023)
P and B-MCL have the highest degree of aneuploidy and exhibit an immune cold tumor microenvironment. Further studies are ongoing to refine the molecular differences among B and P-MCL compared to C-MCL.
IO biomarker
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TP53 (Tumor protein P53) • BCL2 (B-cell CLL/lymphoma 2) • ATM (ATM serine/threonine kinase) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • DNMT3A (DNA methyltransferase 1) • CCND1 (Cyclin D1) • BCL6 (B-cell CLL/lymphoma 6) • SMARCA4 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily A, member 4) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • NOTCH2 (Notch 2) • CARD11 (Caspase Recruitment Domain Family Member 11) • MALT1 (MALT1 Paracaspase) • NFKBIE (NFKB Inhibitor Epsilon) • MIR15A (MicroRNA 15a)
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TP53 mutation • ATM mutation • DNMT3A mutation • CDKN2A deletion • SMARCA4 mutation • CARD11 amplification • Chr del(13)(q14) • CCND1 mutation
over2years
Chromothripsis and Genomic Complexity As Pejorative Prognostic Markers in Pediatric and Adult T-ALL (ASH 2023)
Our study demonstrated that the whole genome analysis of imbalances provides new insights to refine the risk stratification in T-ALL. Notably, genomic complexity (≥ 15 genomic imbalances) and chromothripis demonstrated an association with an inferior outcome in terms of EFS and CIR in pediatric and adult T-ALL.
Clinical
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • RB1 (RB Transcriptional Corepressor 1) • NF1 (Neurofibromin 1) • ETV6 (ETS Variant Transcription Factor 6) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • CREBBP (CREB binding protein) • PTPN2 (Protein Tyrosine Phosphatase Non-Receptor Type 2) • SH2B3 (SH2B Adaptor Protein 3) • CDKN1B (Cyclin dependent kinase inhibitor 1B) • AFDN (Afadin, Adherens Junction Formation Factor) • CASP8AP2 (Caspase 8 Associated Protein 2) • SUZ12 (SUZ12 Polycomb Repressive Complex 2 Subunit) • RPL22 (Ribosomal Protein L22)
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Chr del(13)(q14) • Chr del(1p)
over2years
11q Gain with t(11; 14) or Alone Were Associated with Poor Prognosis in Newly-Diagnosed Multiple Myeloma Patients By SNP-Array Analysis and FISH (ASH 2023)
It demonstrated a statistically significant coexisting with t (11; 14) (p<0.001), complex karyotypes (involves at least 6 chromosomes) (p<0.001), high plasma cell ratio in bone marrow (p=0.001) and poor response to VRD (bortezomib, lenalidomide, dexamethasone) treatment (p<0.001), but mutually exclusive with monosome 13, del(13q14), dup1q21 and t (4; 14). Gain of 11q13.3-q25 is a reproducible chromosomal copy number abnormality in NDMM characterized by coexisting with t (11; 14), complex karyotypes, higher plasma cell ratio in bone marrow and poor treatment response to VRD. t(11; 14) patients with 11q gain had a poorer PFS compared to patients with t(11; 14) only, mPFS was only 9 months for TIE patients. t(11; 14) with 11q gain NDMM patients needs to be considered as high risk and ASCT could improve patients' survival.
Clinical
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CCND1 (Cyclin D1)
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Chr del(13)(q14)
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lenalidomide • bortezomib • dexamethasone
over2years
Prediction of Time-to-First Treatment (TTFT) in Favorable-Risk Chronic Lymphocytic Leukemia (CLL) Patients Using a Novel Stratification through Transcriptome Risk Scoring (ASH 2023)
A transcriptome risk score utilizing novel SPECTRA variables identified a substantial subset of CLL patients with IGHV-mutated status and presence of del(13q) who have uncharacteristically short TTFT, but who would be classified as favorable risk under current best practice stratification. Future directions include validating our results with external patient cohorts from Mayo Clinic and investigating the genetic and transcriptomic profile of SPECTRA low- and high-risk cohorts to determine targetable pathways for treatment.
Clinical
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IGH (Immunoglobulin Heavy Locus) • CD5 (CD5 Molecule)
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IGH mutation • Chr del(13)(q14)
over2years
Longitudinal Profiling Identifies Genetic Mechanisms of Resistance to Four Different Drug Classes in a t(4; 14) Positive Patient (IMW 2023)
At relapse they received daratumumab based salvage in combination with lenalidomide and then pomalidomide...The first profiled bone marrow was collected during leukapheresis for cilta-cel but due to progressive disease the patient received an FCRL5 directed bispecific, and a second sample was collected at progression after a brief sCR to this agent... This case represents the first known bi-allelic loss of CD38 and acquired loss of FCRL5 expression. These events, along with the loss of BCMA highlight the need for more advanced clinical testing to assess the actionability of the diverse therapeutic targets available to treat patients today.
Clinical • IO biomarker
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • RB1 (RB Transcriptional Corepressor 1) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • TNFRSF17 (TNF Receptor Superfamily Member 17) • BCL2L11 (BCL2 Like 11) • IKZF3 (IKAROS Family Zinc Finger 3) • SDC1 (Syndecan 1)
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CDKN2A deletion • RB1 deletion • SDC1 positive • Chr del(13)(q14)
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lenalidomide • Darzalex (daratumumab) • pomalidomide • Carvykti (ciltacabtagene autoleucel)