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BIOMARKER:

CDKN2A negative

i
Other names: CDKN2A, ARF, CDK4I, CDKN2, CMM2, INK4, INK4a, MLM, MTS1, p14, p14ARF, p16, p16INK4a, p19, p19Arf, Cyclin-dependent kinase inhibitor 2A
Entrez ID:
Related biomarkers:
22d
NDURE2: Navigation vs Usual Care for Timely Adjuvant Therapy for Patients With Locally Advanced HNSCC (clinicaltrials.gov)
P=N/A, N=180, Completed, Medical University of South Carolina | Active, not recruiting --> Completed | Trial completion date: Aug 2024 --> Jan 2024 | Trial primary completion date: Aug 2024 --> Dec 2023
Trial completion • Trial completion date • Trial primary completion date
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CDKN2A negative
30d
Biallelic Loss of 7q34 (TRB) and 9p21.3 (CDKN2A/2B) in Adult Ph-Negative Acute T-Lymphoblastic Leukemia. (PubMed, Int J Mol Sci)
A clonal rearrangement of the TRB gene was revealed in 6 out of 7 cases with 7q34 biallelic loss. Both biallelic deletions can be considered favorable prognostic factors, with an association with 9p21 being statistically significant (p = 0.01) and a trend for 7q34 (p = 0.12) being observed.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • PRSS1 (Serine Protease 1)
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CDKN2A negative
1m
Prognostic impact of EGFR expression and immunohistochemistry-based "molecular classification" in bladder cancer. (PubMed, Ann Diagn Pathol)
EGFR expression was found to be high in basal-non-p53 type and was further correlated with adverse prognostic indicators, lamina propria invasion, and high-grade cytology. The identification of molecular subtypes and EGFR expression through immunohistochemistry, alongside traditional bladder cancer classifications, enhances tumor behavior prediction and supports effective clinical management.
Journal
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EGFR (Epidermal growth factor receptor) • GATA3 (GATA binding protein 3)
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EGFR expression • CDKN2A negative • TP53 expression
1m
The combination of p16 and Rb expression pattern is helpful to predict high-risk HPV infection and the primary site in lymph node metastases of squamous cell carcinoma. (PubMed, Pathol Res Pract)
Compared to standalone p16, the combination of p16 overexpression and Rb-partial/complete loss showed equally excellent sensitivity and negative predictive value (each 100 %) as well as improved specificity (100 % versus 93.1 %) and positive predictive value (100 % versus 91.3 %). Our results suggest that combining p16 and Rb expression patterns may be helpful in screening for HR-HPV infection in metastatic lymph nodes and in estimating the primary site of SCC.
Journal
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RB1 (RB Transcriptional Corepressor 1)
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CDKN2A negative
2ms
TNM 8 staging system beyond p16: Double HPV/p16 status is superior to p16 alone in predicting outcome in oropharyngeal squamous cell carcinoma. (PubMed, Eur J Cancer)
The detection of HPV had a significant impact on survival probability for OPSCC patients with both p16-positive and p16-negative tumors. HPV testing should be integrated in cancer staging, especially in regions of low attributable fraction, alongside p16 evaluation to ensure a comprehensive assessment of prognosis.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A negative
2ms
LOOC: Lymphatic Mapping Of Oropharyngeal Cancer (clinicaltrials.gov)
P=N/A, N=150, Recruiting, University College, London | Phase classification: P2 --> P=N/A
Phase classification
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CDKN2A negative
2ms
Trial completion • Metastases
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PD-L1 (Programmed death ligand 1)
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CDKN2A negative
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Keytruda (pembrolizumab) • cisplatin
2ms
Case report: Clinicopathological characteristic of two cases of primary endometrial squamous cell carcinoma and review of the literature. (PubMed, Front Oncol)
There are two main patterns of P16 and P53 expression, P16-positive/P53 wild-type and P16-negative/P53-mutant, but no positive expression of both has been seen so far. It is worth noting that we reported the second case of PESCC with a history of breast cancer, where the patient had been taking the oral aromatase inhibitor drug (exemestane) for a long period of time to reduce the estrogen level, indicating the low estrogen level may be also a key factor in the pathogenesis of PESCC.
Review • Journal
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ER (Estrogen receptor) • TP53 (Tumor protein P53) • TP63 (Tumor protein 63) • PAX8 (Paired box 8)
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TP53 mutation • TP53 wild-type • ER negative • CDKN2A negative • TP53 expression • PGR expression
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exemestane
4ms
Assessing molecular characteristics in a large cohort of anal squamous cell carcinoma patients (ESMO 2024)
Systematic molecular profiling of these pts's tumors will improve our understanding in this rare entity. In a significant percentage of cases, it could provide the access to molecules targeting actionable MA.
Clinical • Tumor mutational burden
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TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • TMB (Tumor Mutational Burden) • PTEN (Phosphatase and tensin homolog) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • KMT2D (Lysine Methyltransferase 2D) • FBXW7 (F-Box And WD Repeat Domain Containing 7)
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TP53 mutation • CDKN2A negative
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FoundationOne® CDx • FoundationOne® Liquid CDx
6ms
The cell cycle regulator p16 promotes tumor infiltrated CD8+ T cell exhaustion and apoptosis. (PubMed, Cell Death Dis)
Furthermore, the deletion of p16 significantly enhances the persistence of CD8+ T cells within tumors and suppresses the terminal exhaustion of tumor-infiltrating T cells. Overall, our findings elucidate how increased p16 expression reshapes T cell intracellular metabolism, drives T cell apoptosis and exhaustion differentiation, and ultimately impairs T cell anti-tumor function.
Journal
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CD8 (cluster of differentiation 8)
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CD8 expression • CDKN2A negative
6ms
EXtRaCT study: Study of Xevinapant With Radiation and Chemotherapy for Patients With Head and Neck Cancer (clinicaltrials.gov)
P1, N=42, Not yet recruiting, University of Chicago | Initiation date: Jan 2024 --> Jan 2025
Trial initiation date • Metastases
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CDKN2A negative
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cisplatin • carboplatin • paclitaxel • xevinapant (Debio 1143)
6ms
Radiotherapy in Combination With Atezolizumab Prior to Surgical Resection for HPV Unrelated HNSCC (clinicaltrials.gov)
P1, N=46, Suspended, University of Colorado, Denver | Phase classification: P1/2 --> P1
Phase classification • Combination therapy
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CDKN2A negative
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Tecentriq (atezolizumab)
6ms
Radiotherapy in Combination With Atezolizumab Prior to Surgical Resection for HPV Unrelated HNSCC (clinicaltrials.gov)
P1/2, N=46, Suspended, University of Colorado, Denver | Trial completion date: Nov 2025 --> Nov 2024 | Recruiting --> Suspended | Trial primary completion date: Nov 2024 --> Nov 2023
Trial completion date • Trial suspension • Trial primary completion date • Combination therapy
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CDKN2A negative
|
Tecentriq (atezolizumab)
6ms
Molecular characterization of the evolution of premalignant lesions in the upper aerodigestive tract. (PubMed, Front Oncol)
SPINK5, a known tumor suppressor gene in HNSCC, was already downregulated in low-grade dysplastic lesions, indicating an early deactivation in the evolution of the disease. Genomic alterations as well as aberrant immune gene expression can be observed early in the evolution of tumors of the upper aerodigestive tract, highlighting the potential for targeting early mechanisms of disease progression.
Journal
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TP53 (Tumor protein P53) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • NOTCH1 (Notch 1) • NOTCH3 (Notch Receptor 3)
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TP53 mutation • CDKN2A negative • NOTCH3 mutation
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nCounter® PanCancer Immune Profiling Panel
7ms
Th2 Cells Are Associated with Tumor Recurrence Following Radiation. (PubMed, Cancers (Basel))
A pathway analysis of genes correlated with Th2 cells revealed the potential repression of the antitumor immune response and the activation of BRCA1-associated DNA damage repair in multiple cohorts. The Th2 infiltrates were enriched in the HPV/p16-negative HNSCC tumors and associated with LRR and mutations in CASP8, CREBBP/EP300, and pathways previously shown to impact the response to radiation.
Journal • BRCA Biomarker
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BRCA1 (Breast cancer 1, early onset) • CREBBP (CREB binding protein) • EP300 (E1A binding protein p300) • CASP8 (Caspase 8)
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CREBBP mutation • CDKN2A negative • EP300 mutation
7ms
Reevaluation of negative cervical conizations: Frequency, diagnostic errors, risk factors and management. (PubMed, Pathol Res Pract)
The negative conization rate was 11.9%, with diagnostic errors identified across pre-surgical biopsy, cone specimen, and deeper levels. Risk factors included older age, higher parity, low expression of p16, Ki-67 and geminin (p<0.05). Recurrence represented 8.1% of the negative cones, without identification of statistically significant risk factors. Pathological review with deeper level sections and 2-year follow-up are recommended for patients with negative conizations.
Journal
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GMNN (Geminin DNA replication inhibitor)
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CDKN2A negative
8ms
Human Papillomavirus Detection in Scrotal Squamous Cell Carcinoma: Case Series from a Population-Based Cancer Registry. (PubMed, J Registry Manag)
The verrucous (warty) SCC subtype case was HPV6-positive and p16-negative. The presence of HPV16 and p16 overexpression in the examined tissue specimens lends additional support for the role of HPV in the etiology of scrotal SCC.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A negative
8ms
EGFR overexpression and macrophage infiltration correlate with poorer prognosis in HPV-negative oropharyngeal cancer via STAT6 signaling. (PubMed, Head Neck)
There is strong correlation between EGFR overexpression and M2 polarization in patients with p16-negative OPC. Immunotherapy with or without EGFR inhibitor could be considered in these high-risk patients.
Journal • IO biomarker
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EGFR (Epidermal growth factor receptor) • STAT6 (Signal transducer and activator of transcription 6) • MRC1 (Mannose Receptor C-Type 1)
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EGFR overexpression • EGFR positive • CDKN2A negative • MRC1 expression
8ms
Enrollment change • Surgery • Post-surgery
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CD4 (CD4 Molecule)
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CDKN2A negative
|
Keytruda (pembrolizumab) • IO102-IO103
8ms
Trial initiation date
|
TNFA (Tumor Necrosis Factor-Alpha)
|
CDKN2A negative
|
cisplatin • carboplatin • xevinapant (Debio 1143)
8ms
A Case Report of Metastatic Breast Cancer with Peritoneal Metastasis and Massive Ascites Responding to CDK4/6 Inhibitor(Palbociclib) (PubMed, Gan To Kagaku Ryoho)
The large amount of ascites decreased after the start of administration of fulvestrant and CDK4/6 inhibitor(PAL). Fifty months later, she continues to do good ADL and PR status. We experienced a case of metastatic breast cancer with massive ascites and peritoneal metastasis that was successfully treated with a CDK4/6 inhibitor(PAL)and achieved long- term survival.
Journal • Metastases
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CCND1 (Cyclin D1)
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CCND1 overexpression • CDKN2A negative • CCND1 expression
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Ibrance (palbociclib) • fulvestrant
8ms
Human papillomavirus (HPV) load is higher in HPVDNA/p16 positive than in HPVDNA positive/p16 negative oropharyngeal squamous cell carcinoma but does not differ significantly between various subsites or correlate to survival. (PubMed, Oral Oncol)
To conclude, the mean viral load in HPVDNA+/p16+ OPSCC was higher than in HPVDNA+/p16- OPSCC, but there was no statistically significant difference in viral load depending on OPSCC subsite or on clinical outcome.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A negative • CDKN2A overexpression
9ms
The evolution of premalignant lesions in the upper aerodigestive tract (ETHNC 2024)
SPINK5, a known tumour suppressor gene in HNSCC, was already downregulated in low-grade dysplastic lesions, indicating an early deactivation in the evolution of the disease. Genomic alterations as well as aberrant immune gene expression can be observed early on in the evolution of tumours of the upper aerodigestive tract, highlighting the potential for targeting early mechanisms of disease progression.
TP53 (Tumor protein P53) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • NOTCH1 (Notch 1) • NOTCH3 (Notch Receptor 3)
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TP53 mutation • CDKN2A negative • NOTCH3 mutation
|
nCounter® PanCancer Immune Profiling Panel
9ms
Prognosis of immunotherapy for non-small cell lung cancer with CDKN2A loss of function. (PubMed, J Thorac Dis)
Our study revealed that CDKN2A LOF NSCLC patients treated with immune checkpoint inhibitor (ICI) mono-therapy or combined therapy had a worse prognosis than those with CDKN2A wild-type NSCLC. However, our study also suggested that ICI could work quite effectively in selective CDKN2A LOF patients.
Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A negative
9ms
Expression of EGFR and p16 in Squamous Cell Carcinoma of External Auditory Canal. (PubMed, Kobe J Med Sci)
In the patients with T3 & T4a EACSCC, prognosis of the patients with positive p16 expression EACSCC tended to be better than those with negative p16 expression. These results suggest the clinical significance of EGFR and p16 expressions in the patients with advanced EACSCC to predict oncological outcomes.
Journal
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EGFR (Epidermal growth factor receptor)
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EGFR expression • EGFR negative • CDKN2A negative
9ms
KEYNOTE-E40: Phase II Trial of Neoadjuvant and Adjuvant IO102-IO103 and Pembrolizumab KEYTRUDA® in Patients With Resectable Tumors (clinicaltrials.gov)
P2, N=30, Recruiting, IO Biotech | Trial completion date: Aug 2028 --> Jan 2027 | Trial primary completion date: Sep 2025 --> Apr 2025
Trial completion date • Trial primary completion date • Surgery • Post-surgery
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CD4 (CD4 Molecule)
|
CDKN2A negative
|
Keytruda (pembrolizumab) • IO102-IO103
9ms
Programmed Death-Ligand 1 (PD-L1) Expression in Penile Squamous Cell Carcinoma - A Comparative Assessment of the Reference Clone 22C3 with SP263 and E1L3N Clones along with a Correlation of Clinicopathologic and Survival Parameters (USCAP 2024)
1. Ours is the first study to demonstrate that SP263 and E3L1N can reliably be used to evaluate PD-L1 in PCs as there is good concordance with the reference clone 22C3. 2.
Clinical • PD(L)-1 Biomarker • IO biomarker
|
PD-L1 (Programmed death ligand 1)
|
PD-L1 expression • PD-L1 overexpression • PD-L1 underexpression • PD-L1 negative • CDKN2A negative • PD-L1-L
|
PD-L1 IHC 22C3 pharmDx • VENTANA PD-L1 (SP263) Assay
9ms
BD4QoL: Big Data for Quality of Life in Head and Neck Cancer (clinicaltrials.gov)
P=N/A, N=420, Recruiting, Fondazione IRCCS Istituto Nazionale dei Tumori, Milano | Trial completion date: Jan 2025 --> Jun 2025 | Trial primary completion date: Apr 2024 --> Sep 2024
Trial completion date • Trial primary completion date • HEOR
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CDKN2A negative
9ms
Pembrolizumab Plus Olaparib in LA-HNSCC (clinicaltrials.gov)
P2, N=45, Recruiting, UNC Lineberger Comprehensive Cancer Center | Trial completion date: Oct 2025 --> Oct 2026 | Trial primary completion date: Oct 2024 --> Oct 2025
Trial completion date • Trial primary completion date • Metastases
|
CDKN2A negative
|
Keytruda (pembrolizumab) • Lynparza (olaparib) • cisplatin
9ms
Retrospective data • Journal
|
CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A negative
9ms
Tumor volume and cancer stem cell expression as prognostic markers for high-dose loco-regional failure in head and neck squamous cell carcinoma - a DAHANCA 19 study. (PubMed, Radiother Oncol)
Tumor volume, p16, and CSC markers are potential biomarkers for HDF for patients with HNSCC treated with (C-)RT. Lower expression of CSC in p16+ OPSCC may contribute to better tumor control.
Journal • Cancer stem
|
CD44 (CD44 Molecule) • SLC3A2 (Solute Carrier Family 3 Member 2)
|
CDKN2A negative • CD44 expression
|
Nimoral (nimorazole)
10ms
Study of Xevinapant With Radiation and Chemotherapy for Patients With Head and Neck Cancer (clinicaltrials.gov)
P1, N=42, Not yet recruiting, University of Chicago | Trial primary completion date: Nov 2025 --> Oct 2027
Trial primary completion date • Metastases
|
CDKN2A negative
|
cisplatin • carboplatin • paclitaxel • xevinapant (Debio 1143)
10ms
TIRACAN: Open Label Phase 2 Basket Trial With Atezolizumab and Tiragolumab in Solid Tumors (clinicaltrials.gov)
P2, N=97, Recruiting, University Medical Center Groningen | Not yet recruiting --> Recruiting
Enrollment open • Pan tumor
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CD8 (cluster of differentiation 8)
|
CDKN2A negative
|
Tecentriq (atezolizumab) • tiragolumab (RG6058)
11ms
Enrollment change • Trial withdrawal • Combination therapy • Oncolytic virus • Metastases
|
PD-L1 (Programmed death ligand 1)
|
CDKN2A negative
|
Opdivo (nivolumab) • carboplatin • paclitaxel • RP3
11ms
INTELHOPE: Dose Escalation Versus Standard in Laryngopharyngeal Cancers (clinicaltrials.gov)
P=N/A, N=100, Completed, Tata Medical Center | Recruiting --> Completed | Phase classification: P1/2 --> PN/A
Trial completion • Phase classification • Metastases
|
CDKN2A negative
11ms
Immunophenotypic p14 and p16 correlations with CDKN2A mutations in primary multiple and familial melanoma: An observational study. (PubMed, Medicine (Baltimore))
This analysis highlighted the value of singular p16 immunohistochemical absence as a predictor for aggressive biological behavior and unfavorable prognosis in familial melanoma and/or MPM, in comparison with the exclusive loss of p14, indifferent to the histopathological subtype. The present study emphasizes the utility of immunohistochemistry as a less expensive method of complementing the current testing arsenal and could represent the starting point for the elaboration of tailored diagnostic and therapeutic algorithms, based on the discovered p14-p16-CDKN2A significant correlation.
Observational data • Retrospective data • Journal
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A deletion • CDKN2A mutation • CDKN2A negative
11ms
PD 0332991 and Cetuximab in Patients With Incurable SCCHN (clinicaltrials.gov)
P1/2, N=96, Completed, Washington University School of Medicine | Active, not recruiting --> Completed | Trial completion date: Oct 2024 --> Nov 2023
Trial completion • Trial completion date
|
CDKN2A negative
|
Erbitux (cetuximab) • Ibrance (palbociclib)
11ms
FISH analysis reveals CDKN2A and IFNA14 co-deletion is heterogeneous and is a prominent feature of glioblastoma. (PubMed, Brain Tumor Pathol)
Furthermore, wt (intact) CDKN2A/IFNA14 were found to be associated with longer survival in recurrent GBMs. Our data suggest that co-deletion of CDKN2A/IFNA14 in GBM negatively correlates with survival and CDKN2A-wt status correlated with longer survival, and with second surgery, itself a marker for improved patient outcomes.
Journal
|
CDKN2A (Cyclin Dependent Kinase Inhibitor 2A)
|
CDKN2A deletion • CDKN2A negative
11ms
Enrollment open
|
CD4 (CD4 Molecule)
|
CDKN2A negative
|
Keytruda (pembrolizumab) • IO102-IO103
11ms
NDURE2: Navigation vs Usual Care for Timely Adjuvant Therapy for Patients With Locally Advanced HNSCC (clinicaltrials.gov)
P=N/A, N=177, Active, not recruiting, Medical University of South Carolina | Recruiting --> Active, not recruiting
Enrollment closed • Metastases
|
CDKN2A negative
12ms
Altered p53/p16 expression is linked to urothelial carcinoma progression but largely unrelated to prognosis in muscle-invasive tumors. (PubMed, Acta Oncol)
Aberrant p53 and p16 immunostaining increases during grade and stage progression although p53 negative and p16 positive immunostaining lack prognostic significance in pT2-4 carcinomas. Potential diagnostic features are that high level p16 expression is limited to neoplastic urothelium and p53 null phenotype to aggressive cancers (grade 3 and invasive).
Journal
|
TP53 (Tumor protein P53)
|
TP53 mutation • CDKN2A negative
12ms
Trial initiation date
|
CDKN2A negative
|
TTI-101 oral