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GENE:

CDK9 (Cyclin Dependent Kinase 9)

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Other names: CDK9, Cyclin Dependent Kinase 9, TAK, Tat-Associated Kinase Complex Catalytic Subunit, Cell Division Cycle 2-Like Protein Kinase 4, Cell Division Protein Kinase 9, Cyclin-Dependent Kinase 9, PITALRE, CDC2L4, C-2k, Cyclin-Dependent Kinase 9 (CDC2-Related Kinase), Serine/Threonine Protein Kinase PITALRE, Serine/Threonine-Protein Kinase PITALRE, CDC2-Related Kinase, CTK1, C-2K
7d
Synergistic antitumor effect of oroxylin A and donafenib in hepatocellular carcinoma through tumor protein p53 signaling pathway activation. (PubMed, World J Gastroenterol)
Oroxylin A and donafenib exert a synergistic anti-tumor effect in HCC by co-activating the TP53 signaling pathway through distinct but complementary molecular axes. This combination strategy presents a promising and viable therapeutic approach to overcome the limitations of donafenib monotherapy in the treatment of HCC.
Journal
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MDM4 (The mouse double minute 4) • CDK9 (Cyclin Dependent Kinase 9)
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Zepsun (donafenib)
10d
Structure-activity insights and molecular modeling approaches of anti-TNBC agents: a comprehensive systematic review. (PubMed, Future Sci OA)
Strategic structural modifications significantly enhance the potency, selectivity, and pharmacokinetics of anti-TNBC agents. Future research should emphasize polypharmacology, advanced delivery strategies, and translational validation to address TNBC heterogeneity.
Review • Journal • PARP Biomarker
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EGFR (Epidermal growth factor receptor) • PARP1 (Poly(ADP-Ribose) Polymerase 1) • CDK9 (Cyclin Dependent Kinase 9) • FOXM1 (Forkhead Box M1)
18d
Computational assessment of clerodane-type furano-diterpenoids from Tinospora crispa: A potential source for anticancer lead compounds. (PubMed, J Mol Graph Model)
A few were predicted to be carcinogenic, immunotoxic, and/or cytotoxic. Overall, the clerodane-type furano-diterpenoids from T. crispa show encouraging results in in-silico studies and may be considered for further modification and lead development.
Journal
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EGFR (Epidermal growth factor receptor) • BRCA1 (Breast cancer 1, early onset) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • MAP2K1 (Mitogen-activated protein kinase kinase 1) • STAT3 (Signal Transducer And Activator Of Transcription 3) • CDK9 (Cyclin Dependent Kinase 9)
26d
Machine Learning-Based Virtual Screening for the Identification of Novel CDK-9 Inhibitors. (PubMed, Biomolecules)
These experiments led to the identification of a novel compound exhibiting interesting therapeutic potential, both as a single agent and in combination with Camptothecin (CPT), revealing varying response profiles across the tested cell lines. These results illustrate the power of integrating ML within anticancer drug discovery pipelines and represent a valuable starting point for the development of novel CDK9 inhibitors.
Journal
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CDK9 (Cyclin Dependent Kinase 9)
1m
Discovery of WWZ-11-098: a rigid and selective CDK6 degrader. (PubMed, Eur J Med Chem)
In addition, WWZ-11-098 displayed favorable pharmacokinetic properties (Cmax = 11833 ng/mL, T1/2 = 2.64 h after a 5 mpk IV dose) and exhibited robust antitumor efficacy (TGI: 77.1 % @10 mpk) in a MOLT-4 xenograft model without signs of toxicity. The compound provides not only a valuable chemical probe but also a lead structure for further development of CDK6 degraders.
Journal
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HER-2 (Human epidermal growth factor receptor 2) • CRBN (Cereblon) • CDK6 (Cyclin-dependent kinase 6) • CDK9 (Cyclin Dependent Kinase 9) • CDK1 (Cyclin-dependent kinase 1)
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HR positive • HER-2 negative
2ms
Phytochemical profiling and anticancer activity of the n-butanol fraction from Ardisia villosa extract: Inhibition of gastric cancer cell proliferation via cell cycle arrest and senescence induction. (PubMed, PLoS One)
Molecular docking analyses further supported these findings by demonstrating strong binding affinities of phytochemicals to key cell cycle regulatory proteins, suggesting a direct molecular basis for their antiproliferative effects. In conclusion, the n-butanol fraction of Ardisia villosa displays potent anticancer activity, particularly in gastric cancer cells, through multi-targeted mechanisms involving cell cycle inhibition and senescence induction, and holds promise as a natural source for future anticancer therapeutics.
Journal
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CCND1 (Cyclin D1) • CCNE1 (Cyclin E1) • CDK6 (Cyclin-dependent kinase 6) • CDK2 (Cyclin-dependent kinase 2) • CDK9 (Cyclin Dependent Kinase 9) • CDKN1A (Cyclin-dependent kinase inhibitor 1A) • CDK3 (Cyclin Dependent Kinase 3)
2ms
Disrupting CDK9 activity suppresses triple-negative breast cancer and is enhanced by EGFR Inhibition. (PubMed, Cell Oncol (Dordr))
Our results position CDK9 as a promising therapeutic target in TNBC, either alone or in combination with EGFR inhibition, provided that side effects associated with this combination treatment can be controlled.
Journal
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TGFB1 (Transforming Growth Factor Beta 1) • CDK9 (Cyclin Dependent Kinase 9)
2ms
ZMYM3 S464: a potential phospho-regulatory hub in epigenetic remodeling and oncogenesis. (PubMed, Mol Genet Genomics)
ZMYM3 S464 emerges as a phospho-regulatory hub that coordinates epigenetic silencing, HR repair, and mitotic fidelity. Its cancer-type-specific upregulation offers a novel biomarker for HR-deficiency stratification and a therapeutic entry point for modulating BRCA1 function or epigenetic drug sensitivity; functional validation in HR-deficient models is now warranted.
Journal • BRCA Biomarker
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BRCA1 (Breast cancer 1, early onset) • CDK9 (Cyclin Dependent Kinase 9) • ZMYM3 (Zinc Finger MYM-Type Containing 3) • CDK13 (Cyclin Dependent Kinase 13)
2ms
Romaciclib, a CDK8/CDK19 inhibitor, can overcome venetoclax resistance through a combinatorial strategy. (PubMed, bioRxiv)
These findings prove the highly synergistic mechanism of action of RVU120+VEN combination and the potential to overcome primary/acquired VEN resistance in relapse/refractory AML disease. Altogether, the presented results support ongoing clinical studies evaluating romaciclib and VEN in VEN/HMA-refractory patients ( NCT06191263 ) and provide a basis for future exploration as a frontline therapy in VEN-naïve patients.
Journal
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MCL1 (Myeloid cell leukemia 1) • IL6 (Interleukin 6) • STAT3 (Signal Transducer And Activator Of Transcription 3) • TGFB1 (Transforming Growth Factor Beta 1) • CDK9 (Cyclin Dependent Kinase 9)
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Venclexta (venetoclax) • romaciclib (RVU120)
2ms
Rational Design of Oxazolonylflavone Derivatives as Novel CDK4/9 Inhibitors with Potent Antitumor Efficacy and Oral Bioavailability. (PubMed, J Med Chem)
Furthermore, HS-36 possessed an excellent pharmacokinetic profile, including good oral bioavailability (F = 41.8%), which enabled solid and well-tolerated in vivo antitumor efficacy (TGI = 68.8%) in a MV-4-11 xenograft model. This work not only presents HS-36 as a promising lead compound but also validates our rational approach to optimizing natural product scaffolds.
Journal
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CDK9 (Cyclin Dependent Kinase 9)
3ms
Targeting CDK9-dependent transcriptional addiction: a novel chemoprevention strategy for oral carcinogenesis via adenosine deaminase modulation. (PubMed, Cell Death Dis)
Transcriptional addiction is an important feature in the process of oral mucosal carcinogenesis. Targeting this CDK9-dependent transcriptional addiction induces cell apoptosis by downregulating ADA, and thereby interfering the enzymatic conversion of adenosine to inosine to hamper oral mucosal carcinogenesis.
Journal
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CDK9 (Cyclin Dependent Kinase 9)
3ms
Dinaciclib improves treatment response in chemoresistant hepatoblastoma. (PubMed, Sci Rep)
A HB patient-derived xenograft (PDX) model was treated with placebo, vincristine + irinotecan (VI), dinaciclib, or VI + dinaciclib to evaluate tumor growth and response to therapy. In our PDX model, treatment with VI + dinaciclib resulted in decreased tumor volume, viability and HB cell proliferation. Given these findings, combination treatment with VI and dinaciclib should be investigated further as a treatment for chemoresistant HB.
Journal • PARP Biomarker
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CDK9 (Cyclin Dependent Kinase 9)
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irinotecan • vincristine • dinaciclib (MK-7965)