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BIOMARKER:

CDK6 amplification

i
Other names: CDK6, PLSTIRE, Cyclin-dependent kinase 6
Entrez ID:
Related biomarkers:
Associations
2ms
Phase 2 Study of Palbociclib in Patients with Tumors with CDK4 or CDK6 Amplification: Results from the NCI-MATCH ECOG-ACRIN Trial (EAY131) Sub-protocol Z1C. (PubMed, Clin Cancer Res)
Palbociclib showed limited activity in histology-agnostic CDK4- or CDK6-amplified tumors, though CNS tumors may be worthy of future investigation.
P2 data • Journal
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CDK4 (Cyclin-dependent kinase 4) • CDK6 (Cyclin-dependent kinase 6)
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CDK4 amplification • CDK6 amplification
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Ibrance (palbociclib)
1year
Clinicopathologic characterization of diffuse pediatric-type high-grade glioma, H3-wildtype and IDH-wildtype: an aggressive and genomically complex group of tumors affecting children and adults (SNO 2023)
Overall, while the pediatric and adult pHGG have similar outcomes, there are differences in their genomic structures, most notably in adult pHGG harboring a higher SCNA load. Overall, pHGG represent a biologically diverse set of clinically aggressive tumors that warrant further intensive study.
Clinical
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EGFR (Epidermal growth factor receptor) • MET (MET proto-oncogene, receptor tyrosine kinase) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • RB1 (RB Transcriptional Corepressor 1) • PDGFRA (Platelet Derived Growth Factor Receptor Alpha) • MGMT (6-O-methylguanine-DNA methyltransferase) • MYCN (MYCN Proto-Oncogene BHLH Transcription Factor) • CDK4 (Cyclin-dependent kinase 4) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • MDM4 (The mouse double minute 4) • CDK6 (Cyclin-dependent kinase 6)
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MET amplification • CDKN2A deletion • MYCN amplification • MGMT promoter methylation • RB1 deletion • MDM4 amplification • IDH wild-type • RB deletion • CDK6 amplification
over1year
A comprehensive genomic study of 390 H3F3A-mutant pediatric and adult diffuse high-grade gliomas, CNS WHO grade 4. (PubMed, Acta Neuropathol)
Through our analysis, we were able to identify molecular features characteristic of DMG and DHG. By identifying the recurrent co-mutations including actionable FGFR1 point mutations found in nearly one-third of H3K27M-mutant DMG in young adults, our findings can inform clinical translational studies, patient diagnosis, and clinical trial design.
Journal
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PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • FGFR1 (Fibroblast growth factor receptor 1) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • PDGFRA (Platelet Derived Growth Factor Receptor Alpha) • NF1 (Neurofibromin 1) • CDK4 (Cyclin-dependent kinase 4) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • PIK3R1 (Phosphoinositide-3-Kinase Regulatory Subunit 1) • CDK6 (Cyclin-dependent kinase 6) • H3-3A (H3.3 Histone A)
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PIK3CA mutation • NF1 mutation • CDKN2A deletion • FGFR1 mutation • CDK4 amplification • PIK3R1 mutation • CDK6 amplification
over1year
Prognostic significance of CDK6 amplification in esophageal squamous cell carcinoma. (PubMed, Cancer Treat Res Commun)
Moreover, invasion depth was an independent factor for ESCC prognosis. Taken together, for ESCC patients in III-IV stage, CDK6 amplification indicated a better prognosis.
Journal
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CDK6 (Cyclin-dependent kinase 6)
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CDK6 amplification • CDK6 expression
over1year
Genomic landscape of CDK6 amplification and its potential prognostic value in adult-type diffuse gliomas. (ASCO 2023)
Our study compared the mutational characteristics of gliomas with CDK4/6 alterations and demonstrated the potential prognostic value of CDK6 amplification, and provide the new basis of precise diagnosis and treatment in gliomas.
Clinical
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • CDK4 (Cyclin-dependent kinase 4) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • CDK6 (Cyclin-dependent kinase 6)
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CDKN2A deletion • CDKN2A mutation • CDK4 amplification • CDK4 mutation • CDK6 amplification
over1year
Abemaciclib in recurrent/metastatic head and neck squamous cell carcinoma (RM-HNSCC) harboring CDKN2A loss, and/or CCND1 and/or CDK6 amplification: A phase II multicenter trial. (ASCO 2023)
This single arm, multicentre Phase II evaluated the efficacy of abemaciclib (200mg/d orally BID) in molecularly-selected, HPV negative (HPV-), RM-HNSCC patients (pts) progressing after at least 1 prior line of platinum and cetuximab. Abemaciclib had limited antitumor activity in RM-HNSCC harboring molecular alteration in CDK4/6 pathway. Clinical trial information: NCT03356223.
Clinical • P2 data • Metastases
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • RB1 (RB Transcriptional Corepressor 1) • CCND1 (Cyclin D1) • CDK6 (Cyclin-dependent kinase 6)
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RB1 deletion • CCND1 amplification • RB deletion • CDK6 amplification
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Erbitux (cetuximab) • Verzenio (abemaciclib)
almost2years
Genomic profiling and prognostic factors of H3 K27M-mutant spinal cord diffuse glioma. (PubMed, Brain Pathol)
Interestingly, the histological type, an independent prognostic factor in multivariate Cox regression, can also stratify molecular features of H3 K27M-mutant spinal cord glioma, including the RB pathway, KRAS/PI3K pathway, and chromosome arms CNV. In conclusion, although all H3 K27M-mutant spinal cord diffuse glioma were diagnosed as WHO Grade 4, the histological type, molecular features representing chromatin instability, and molecular alterations associated with accelerated cell proliferative activity should not be ignored in clinical management.
Journal
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KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • NF1 (Neurofibromin 1) • ATRX (ATRX Chromatin Remodeler) • CDK6 (Cyclin-dependent kinase 6) • PPM1D (Protein Phosphatase Mg2+/Mn2+ Dependent 1D)
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TP53 mutation • KRAS mutation • NF1 mutation • ATRX mutation • ATRX deletion • CDK6 amplification
2years
Resistance to CDK4/6 inhibition: Mechanisms and strategies to overcome a therapeutic problem in the treatment of hormone receptor-positive metastatic breast cancer. (PubMed, Biochim Biophys Acta Mol Cell Res)
Selective CDK4/6 inhibitors, such as palbociclib, ribociclib, and abemaciclib, have been approved in combination with hormone therapy for the treatment of patients with HR+, HER2-negative advanced or metastatic breast cancer (mBC). Identifying the different mechanisms by which resistance to CDK4/6 inhibitors occurs may help to design new treatment strategies to improve patient outcomes. This review presents the currently available knowledge on the mechanisms of resistance to CDK4/6 inhibitors, explores possible treatment strategies that could overcome this therapeutic problem, and summarizes relevant recent clinical trials.
Review • Journal
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HER-2 (Human epidermal growth factor receptor 2) • FGFR (Fibroblast Growth Factor Receptor) • CDK2 (Cyclin-dependent kinase 2)
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HR positive • HER-2 negative • CCNE1 amplification • CDK4 amplification • CDK2 amplification • CDK6 amplification
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Ibrance (palbociclib) • Verzenio (abemaciclib) • Kisqali (ribociclib)
over2years
Molecular Stratification of Medulloblastoma: Clinical Outcomes and Therapeutic Interventions. (PubMed, Anticancer Res)
Recent WHO (2021) guidelines stratified MB into four molecular subgroups with four and eight further subgroups for SHH and non-WNT/non-SHH MB, respectively. In this review, we discuss advancements in genetics, epigenetics, and transcriptomics for better characterization, prognostication, and treatment of MB using precision medicine.
Clinical data • Review • Journal
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TP53 (Tumor protein P53) • MYC (V-myc avian myelocytomatosis viral oncogene homolog) • PTEN (Phosphatase and tensin homolog) • PTCH1 (Patched 1) • CTNNB1 (Catenin (cadherin-associated protein), beta 1) • KDM6A (Lysine Demethylase 6A) • CDK6 (Cyclin-dependent kinase 6) • GLI1 (GLI Family Zinc Finger 1) • GFI1 (Growth Factor Independent 1 Transcriptional Repressor) • GLI2 (GLI Family Zinc Finger 2)
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TP53 mutation • MYC amplification • KDM6A mutation • TP53 amplification • CDK6 amplification
over2years
Blood-based detection of actionable alterations from NCI-MATCH patients with no tissue results. (ASCO 2022)
The most common assignable treatment arms were Z1B/Z1BX1 (palbociclib with CCND1/2/3, N = 13), Z1F (copanlisib with PIK3CA Mutations, N = 13), S1/S1X1 (trametinib with NF1 mutation, N = 12), and Z1C/Z1CX1 (palbociclib with CDK4/CDK6 Amplification and Rb Expression by IHC, N = 10). Variants observed in the blood are consistent with what is reported in the tissue. Using liquid biopsy when tissue is not evaluable can expand the ability of patients to obtain mutation information that can inform treatment compared to using tumor tissue only. Cell-free DNA provided valuable mutation information for these patients and could have resulted in up to an additional 75 patients being eligible for treatment selection based on their mutation profile.
Clinical
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KRAS (KRAS proto-oncogene GTPase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • DNMT3A (DNA methyltransferase 1) • RB1 (RB Transcriptional Corepressor 1) • NF1 (Neurofibromin 1) • CCND1 (Cyclin D1) • TET2 (Tet Methylcytosine Dioxygenase 2) • CDK4 (Cyclin-dependent kinase 4) • CDK6 (Cyclin-dependent kinase 6) • PPM1D (Protein Phosphatase Mg2+/Mn2+ Dependent 1D)
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TP53 mutation • KRAS mutation • PIK3CA mutation • NF1 mutation • TET2 mutation • CDK4 amplification • PPM1D mutation • CDK4 mutation • CDK6 amplification
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TruSight Oncology 500 Assay
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Mekinist (trametinib) • Ibrance (palbociclib) • Aliqopa (copanlisib)
over3years
New trial
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor) • PGR (Progesterone receptor) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • CCND1 (Cyclin D1) • CDK6 (Cyclin-dependent kinase 6) • CCND3 (Cyclin D3)
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ER positive • HER-2 negative • CDKN2A mutation • CCND1 amplification • PGR positive • CDK4 amplification • CCND1 mutation • CDK4 mutation • CDK6 amplification
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Kisqali (ribociclib)
over3years
Intimal sarcomas and undifferentiated cardiac sarcomas carry mutually exclusive MDM2, MDM4, and CDK6 amplifications and share a common DNA methylation signature. (PubMed, Mod Pathol)
We further report novel co-amplifications of various oncogenes, which may have therapeutic implications. Finally, the genetic and epigenetic concordance of ISAs and UPS of the left atrium further supports a shared pathogenesis and common classification.
Journal • Epigenetic controller
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CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • PDGFRA (Platelet Derived Growth Factor Receptor Alpha) • CCND1 (Cyclin D1) • MDM2 (E3 ubiquitin protein ligase) • MYCN (MYCN Proto-Oncogene BHLH Transcription Factor) • CDK4 (Cyclin-dependent kinase 4) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • MDM4 (The mouse double minute 4) • CDK6 (Cyclin-dependent kinase 6)
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MDM2 amplification • CDKN2A deletion • CCND1 amplification • MDM4 amplification • CDK6 amplification
over3years
[VIRTUAL] A pan-cancer study on characteristic of CDK4/6 amplification between Chinese and Western patients. (ASCO 2021)
Our study provided a characteristic of CDK4/6 amplification in Chinese and Western pan-cancer patients . Analysis revealed frequent CDK4/6 amplification in lung cancer, sarcoma, stomach carcinoma, ovarian carcinoma and liver cancer . It is suggested patient with these cancer types may potentially benefit from CDK4/6 inhibitor.
Clinical • Pan tumor
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CDK4 (Cyclin-dependent kinase 4)
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CDK4 amplification • CDK6 amplification
over3years
Utility of Circulating Tumor DNA in Identifying Somatic Mutations and Tracking Tumor Evolution in Patients with Non-small Cell Lung Cancer. (PubMed, Chest)
Although ctDNA exhibited similar utility to tissue biopsies, more mutations in targetable genes were missed in tissue biopsies. Therefore, the evaluation of ctDNA in conjunction with tissue biopsies may help to detect additional targetable mutations to improve clinical outcomes in advanced NSCLC.
Clinical • Journal
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EGFR (Epidermal growth factor receptor) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • CDK6 (Cyclin-dependent kinase 6)
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KRAS mutation • EGFR mutation • BRAF mutation • MET amplification • BRAF amplification • CDK6 amplification