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BIOMARKER:

ALK rearrangement + PIK3CA mutation

i
Other names: Anaplastic Lymphoma Kinase, Anaplastic Lymphoma Kinase (Ki-1), CD246 Antigen, Mutant Anaplastic Lymphoma Kinase, ALK, ALK Receptor Tyrosine Kinase, Anaplastic Lymphoma Receptor Tyrosine Kinase, ALK Tyrosine Kinase Receptor, PIK3CA, Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha, Phosphoinositide-3-kinase, catalytic, alpha polypeptide, Serine/threonine protein kinase PIK3CA, PtdIns-3-kinase subunit P110-alpha, PI3K-alpha, Phosphatidylinositol-4,5-bisphosphate 3-kinase 110
Entrez ID:
7d
CRAFT: the NCT-PMO-1602 Phase II Trial (clinicaltrials.gov)
P2, N=175, Active, not recruiting, German Cancer Research Center | Recruiting --> Active, not recruiting
Enrollment closed • Tumor mutational burden
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HER-2 (Human epidermal growth factor receptor 2) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • TMB (Tumor Mutational Burden) • RET (Ret Proto-Oncogene) • PTEN (Phosphatase and tensin homolog) • PI3K (Phosphoinositide 3-kinases)
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BRAF V600E • TMB-H • PD-L1 overexpression • HER-2 overexpression • HER-2 amplification • PIK3CA mutation • BRAF V600 • RET fusion • ALK rearrangement • BRAF V600K • AKT1 mutation • PD-L1 amplification • ALK rearrangement + PIK3CA mutation
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Herceptin (trastuzumab) • Tecentriq (atezolizumab) • Zelboraf (vemurafenib) • Alecensa (alectinib) • Perjeta (pertuzumab) • Cotellic (cobimetinib) • ipatasertib (RG7440) • Itovebi (inavolisib)
1m
Molecular characterization of adult non-glioblastoma central nervous system (CNS) tumors to identify potential targettable alterations (AIOM 2024)
4 pts received TT at recurrence, within clinical trials: one with grade 3 meningioma and ALK rearrangement treated with alectinib, one with PTCH1 mutant medulloblastoma treated with vismodegib, and two with high TMB treated with nivolumab/ipilumumab. The incidence of targettable molecular alterations in adult CNS tumor patients was lower than in GBM. Nevertheless, in a few selected cases TT have the potential to increase treatment options at recurrence and improve outcomes.
Clinical • Tumor mutational burden • BRCA Biomarker • PD(L)-1 Biomarker • IO biomarker
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BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • TMB (Tumor Mutational Burden) • MET (MET proto-oncogene, receptor tyrosine kinase) • BRCA1 (Breast cancer 1, early onset) • BRCA2 (Breast cancer 2, early onset) • RET (Ret Proto-Oncogene) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • FGFR1 (Fibroblast growth factor receptor 1) • PDGFRA (Platelet Derived Growth Factor Receptor Alpha) • NF1 (Neurofibromin 1) • POLE (DNA Polymerase Epsilon) • MDM2 (E3 ubiquitin protein ligase) • PTCH1 (Patched 1) • NF2 (Neurofibromin 2) • BRCA (Breast cancer early onset) • NTRK (Neurotrophic receptor tyrosine kinase)
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BRAF V600E • BRCA2 mutation • BRCA1 mutation • TMB-H • PIK3CA mutation • MET amplification • ALK rearrangement • FGFR1 amplification • POLE mutation • NF1 mutation • MDM2 amplification • RET mutation • PTCH1 mutation • NF2 mutation • ROS1 mutation • BRCA mutation • ALK rearrangement + PIK3CA mutation • PTCH1 rearrangement • NTRK fusion
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FoundationOne® CDx
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Opdivo (nivolumab) • Yervoy (ipilimumab) • Alecensa (alectinib) • Erivedge (vismodegib)
1year
Negative hyperselection of elderly patients with RAS and BRAF wild-type metastatic colorectal cancer receiving initial panitumumab plus FOLFOX or 5-FU/LV. (PubMed, Eur J Cancer)
Molecular hyperselection and comprehensive genomic profiling have a potential usefulness in elderly patients with RAS/BRAF wild-type, pMMR/MSS mCRC, eligible for upfront EGFR inhibition.
Journal • Metastases
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HER-2 (Human epidermal growth factor receptor 2) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • PTEN (Phosphatase and tensin homolog) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • MAP2K1 (Mitogen-activated protein kinase kinase 1) • AKT1 (V-akt murine thymoma viral oncogene homolog 1) • RAS (Rat Sarcoma Virus) • NTRK (Neurotrophic receptor tyrosine kinase)
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HER-2 amplification • PIK3CA mutation • MET amplification • PTEN mutation • ALK rearrangement • BRAF wild-type • MET mutation • RET rearrangement • AKT1 mutation • PIK3CA mutation + PTEN mutation • ALK rearrangement + PIK3CA mutation
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5-fluorouracil • Vectibix (panitumumab) • leucovorin calcium
over1year
Ipatasertib and atezolizumab in cancers with increased PI3K-AKT pathway activity: First results from the CRAFT trial (ESMO 2023)
Conclusions Ipatasertib and atezolizumab were ineffective in this patient population with PI3K-AKT-altered tumors. More stringent molecular selection criteria and an addition trial arm were implemented (arm 5).
PD(L)-1 Biomarker • IO biomarker
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HER-2 (Human epidermal growth factor receptor 2) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • PTEN (Phosphatase and tensin homolog)
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BRAF V600E • HER-2 overexpression • HER-2 amplification • PIK3CA mutation • BRAF V600 • PTEN deletion • ALK rearrangement • BRAF V600K • AKT1 E17K • AKT1 mutation • ALK rearrangement + PIK3CA mutation
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Tecentriq (atezolizumab) • ipatasertib (RG7440)
almost2years
Alterations in PIK3CA/PTEN as resistance mechanisms in lung cancer patients progressing on first-line next generation EGFR/ALK tyrosine kinase inhibitors (AACR 2023)
We identified pts with EGFR mutations or ALK rearrangements who developed PIK3CA/PTEN alterations in tissue biopsy and/or circulating tumor DNA upon progression to first-line osimertinib/alectinib. Activating PI3KCA mutations and molecular events leading to PTEN loss are frequent events at resistance to first-line EGFR/ALK TKIs, and can be detected concomitantly. Functional assays confirmed that these alterations act as resistance mechanisms. These observations are of interest as PI3KCA/mTOR inhibitors may have a role in overcoming resistance.
Clinical
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EGFR (Epidermal growth factor receptor) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • PTEN (Phosphatase and tensin homolog)
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EGFR mutation • PIK3CA mutation • ALK rearrangement • PIK3CA E545K • ALK fusion • EGFR mutation + PIK3CA mutation • PIK3CA E545 • PIK3CA mutation + PTEN mutation • EGFR mutation + PTEN mutation • PIK3CA N345K • ALK rearrangement + PIK3CA mutation
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Tagrisso (osimertinib) • Alecensa (alectinib)
2years
Molecular Profiling of ALK Fusion Variants Observed among Indian Lung Cancer Patients: Tertiary Cancer Center Perspective (AMP 2022)
The present study illustrates the profile of the ALK fusion variants observed in this Indian cohort. The frequency of different fusion variants as well as the occurrence of co-mutations will help unravel the diverse mechanism of response to the ALK-directed therapy.
Clinical
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EGFR (Epidermal growth factor receptor) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • EML4 (EMAP Like 4) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • SMAD4 (SMAD family member 4)
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TP53 mutation • EGFR mutation • PIK3CA mutation • ALK positive • ALK rearrangement • EML4-ALK fusion • ALK fusion • ALK mutation • ALK rearrangement + PIK3CA mutation
over2years
MOLECULAR SCREENING OF ADVANCED SARCOMAS THROUGH NEXT-GENERATION SEQUENCING IN A TERTIARY UNIVERSITY HOSPITAL (CTOS 2022)
One patient with a BRAF-mutated MPNST was treated with BRAF/MEK inhibitors encorafenib and binimetinib, reaching partial response and a progression free survival of 7 months...Crizotinib was used in two heavily pretreated patients (one ROS1-rearranged liposarcoma and one ALK-rearranged liposarcoma), with disappointing outcomes... Nowadays, cytotoxic chemotherapy still remains the front-line therapy in most locally advanced and metastatic unresectable sarcomas. Considering the low response rates to standard treatment, the fact that effective therapeutic alternatives are scarce, and the young age of many of these patients, there is an urgent need for the development of novel therapies. A profound understanding of the molecular mechanisms of sarcomagenesis is essential to propel the era of personalized medicine in advanced sarcomas.
Clinical • Next-generation sequencing
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ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B)
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BRAF V600E • PIK3CA mutation • BRAF V600 • MET amplification • ALK rearrangement • ROS1 rearrangement • ALK rearrangement + PIK3CA mutation
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Xalkori (crizotinib) • Mektovi (binimetinib) • Braftovi (encorafenib)
over2years
MET and NF2 alterations confer early resistance to first-line alectinib treatment in ALK-rearranged non-small cell lung cancer (ESMO 2022)
Of these, 52 received first-line alectinib treatment (1L) and 56 received alectinib after crizotinib resistance (2L). Also, NF2-mutant patients only had a median PFS of 4 months, significantly poorer than those without (HR 11.1, 95CI 2.17-50; p<0.001). Conclusions By analyzing different mutational profiles of ALK-rearranged patients after alectinib treatment, we proposed MET and NF2 as putative mechanisms that conferred resistance to early resistance of first-line alectinib, which shone light on future tailored treatment for ALK-positive NSCLCs.
Clinical
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KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • NF2 (Neurofibromin 2)
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KRAS mutation • BRAF mutation • NRAS mutation • PIK3CA mutation • ALK positive • MET amplification • ALK rearrangement • ALK mutation • MET mutation • ALK G1202R • NF2 mutation • ALK G1269A • ALK I1171N • ALK I1171T • ALK I1171 • ALK L1196M • ALK amplification • ALK V1180L • ALK E1129V • ALK rearrangement + PIK3CA mutation • MET D1228H
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Xalkori (crizotinib) • Alecensa (alectinib)
over2years
Genomic Landscape of Liquid Biopsy in Advanced Lung Cancer Patients, an Indian Experience (IASLC-WCLC 2022)
A high positivity rate of detection of actionable and prognostic genomic alterations in the liquid biopsy has established the importance of blood as an important resource of detecting mutations in advanced NSCLC which directly impacts the clinical outcome in these patients. Furthermore, presence of co-positivity of mutations highlights the biologic mechanisms responsible for drug resistance in NSCLC patients.
Clinical • Liquid biopsy
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • MAP2K1 (Mitogen-activated protein kinase kinase 1)
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TP53 mutation • BRAF V600E • KRAS mutation • EGFR mutation • NRAS mutation • PIK3CA mutation • BRAF V600 • EGFR L858R • EGFR T790M • ALK rearrangement • MET exon 14 mutation • ROS1 rearrangement • EGFR positive • EGFR mutation + PIK3CA mutation • ALK rearrangement + PIK3CA mutation
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Oncomine Lung Cell-Free Total Nucleic Acid Research Assay
3years
Clinical • P2 data • Journal • Tumor Mutational Burden • PD(L)-1 Biomarker • IO biomarker
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HER-2 (Human epidermal growth factor receptor 2) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • TMB (Tumor Mutational Burden)
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TMB-H • HER-2 overexpression • BRAF mutation • HER-2 amplification • PIK3CA mutation • BRAF V600 • HER-2 mutation • ALK rearrangement • ALK rearrangement + PIK3CA mutation
over3years
Resistance profiles of anaplastic lymphoma kinase tyrosine kinase inhibitors in advanced non-small-cell lung cancer: a multicenter study using targeted next-generation sequencing. (PubMed, Eur J Cancer)
The mechanisms of ALK TKI resistance were heterogeneous; ALK mutations were found in less than one-third of patients. Compound ALK mutations, which may confer lorlatinib resistance, may occur in crizotinib, ceritinib, and alectinib-resistant lung cancers.
Clinical • Journal • Next-generation sequencing
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EGFR (Epidermal growth factor receptor) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • NRAS (Neuroblastoma RAS viral oncogene homolog) • KIT (KIT proto-oncogene, receptor tyrosine kinase)
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BRAF V600E • EGFR mutation • NRAS mutation • PIK3CA mutation • BRAF V600 • ALK rearrangement • KIT mutation • PIK3CA E545K • MET mutation • ALK G1202R • NRAS G12 • ALK G1269A • ALK I1171T • PIK3CA E545 • ALK I1171 • ALK L1196M • ALK E1210K • ALK D1203N • ALK G1128A • ALK rearrangement + PIK3CA mutation • EGFR P753S • NRAS G12V • KIT D820E
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Xalkori (crizotinib) • Alecensa (alectinib) • Lorbrena (lorlatinib) • Zykadia (ceritinib) • Alunbrig (brigatinib)
over3years
[VIRTUAL] Deep molecular characterization of never smoker non-small cell lung cancer (NSCLC) patients (ESMO 2021)
NGS approach should be implemented upfront in current NSCLC management, especially in specific Pts subgroups more likely to harbor actionable oncogenic drivers, such as never-smokers, with potential impact on therapeutic approaches.
Clinical • IO biomarker
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • MET (MET proto-oncogene, receptor tyrosine kinase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • RET (Ret Proto-Oncogene) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • CDK4 (Cyclin-dependent kinase 4)
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KRAS mutation • EGFR mutation • BRAF mutation • HER-2 amplification • NRAS mutation • PIK3CA mutation • RET fusion • ALK rearrangement • MET exon 14 mutation • ROS1 positive • ROS1 rearrangement • ALK rearrangement + PIK3CA mutation • KRAS deletion • CDK4 mutation
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FoundationOne® Liquid CDx • Oncomine Focus Assay
almost4years
[VIRTUAL] A novel algorism evaluating dominant clonality in Chinese NSCLC patients with concomitant EGFR and ALK variation (AACR 2021)
Compared with EGFR or ALK mono-mutation, abundance of dominant clone comprising either mutated EGFR or ALK-fusion in co-mutation samples is lower, which was proved by the reported poor TKI efficacy in co-mutated patients. CTS can evaluate dominant clone for NSCLC with co-mutated driver genes. Indicated by CTS, tumor with EGFR/ALK co-mutation tends to form a single dominant clone.
Clinical
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • NRAS (Neuroblastoma RAS viral oncogene homolog) • KIT (KIT proto-oncogene, receptor tyrosine kinase) • ROS1 (Proto-Oncogene Tyrosine-Protein Kinase ROS) • EML4 (EMAP Like 4)
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EGFR mutation • BRAF mutation • PIK3CA mutation • EGFR L858R • EGFR exon 19 deletion • ALK positive • ALK rearrangement • ALK fusion • ALK mutation • ALK rearrangement + PIK3CA mutation • EGFR fusion
4years
Comprehensive genomic profiling of Brazilian non-small cell lung cancer patients (GBOT 0118/LACOG0418). (PubMed, Thorac Cancer)
"TP53 was the most commonly comutated gene across samples. TP53 p.R337H was associated with somatic mutations in EGFR and ERBB2. Most samples had low TMB; only 5.5% of samples had high TMB."
Journal • Clinical
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • ALK (Anaplastic lymphoma kinase) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • TMB (Tumor Mutational Burden) • STK11 (Serine/threonine kinase 11)
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TP53 mutation • KRAS mutation • EGFR mutation • TMB-H • BRAF mutation • PIK3CA mutation • ALK rearrangement • STK11 mutation • TMB-L • EGFR mutation + PIK3CA mutation • ALK rearrangement + PIK3CA mutation
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FoundationOne® CDx