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BIOMARKER:

6-gene signature

1year
Uncovering key genes and molecular mechanisms of dendritic cell dysfunction in Esophageal Cancer: implications for Novel Diagnostic and therapeutic strategies. (PubMed, Discov Oncol)
Drug sensitivity analysis suggested that Metformin, Gefitinib, and Lapatinib may be more effective in the low-risk group, while Pyrimethamine, Axitinib, and Rapamycin may be more beneficial for high-risk patients. In summary, we identified a 6-gene signature related to dendritic cell dysfunction that can predict prognosis in esophageal cancer, offering valuable insights for personalized therapeutic strategies.
Journal • PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • PD-1 (Programmed cell death 1) • GDF15 (Growth differentiation factor 15) • SLC5A1 (Solute Carrier Family 5 Member 1)
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PD-1 expression • 6-gene signature
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gefitinib • lapatinib • Inlyta (axitinib) • sirolimus • metformin
over1year
Vasculogenic mimicry-related gene prognostic index for predicting prognosis, immune microenvironment in clear cell renal cell carcinoma. (PubMed, Heliyon)
The results of single-cell analysis, GEPIA, HPA, and qRT-PCR validated the model genes' expression. Our novel findings constructed a convenient and reliable 6 gene signatures as potential immunologic and prognostic biomarkers of VM in ccRCC.
Journal • IO biomarker
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MALAT1 (Metastasis associated lung adenocarcinoma transcript 1) • L1CAM (L1 cell adhesion molecule) • EFNA1 (Ephrin A1)
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6-gene signature
almost2years
Elucidating Hedgehog pathway's role in HNSCC progression: insights from a 6-gene signature. (PubMed, Sci Rep)
Patients in low-risk group with a low TIDE score had higher immunotherapy sensitivity relative to those in high-risk group. This study revealed novel findings of the Hedgehog pathway in HNSCC progression and opened up a Hedgehog pathology-related signature to help identify risk factors contributing to HNSCC progression and help predict immunotherapy outcomes.
Journal • Gene Signature • IO biomarker
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EFNB2 (Ephrin B2)
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6-gene signature
almost2years
Metabolism-Related Prognostic Biomarkers, Purine Metabolism and Anti-Tumor Immunity in Colon Adenocarcinoma. (PubMed, Front Biosci (Landmark Ed))
This study confirmed the importance of metabolism-related pathways and in particular purine metabolism in the tumorigenesis, prognosis and anti-tumor immunity of COAD. We identified a 6-gene prognostic signature comprised of EPHX2, GPX3, PTGDS, NAT2, ACOX1 and CPT2. In addition, four potential immune-metabolic checkpoints (GUCY1A1, GUCY1B1, PDE1A and PDE5A) were identified, which could be used to improve the efficacy of immunotherapy in COAD.
Journal • IO biomarker
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PDE5A (Phosphodiesterase 5A) • ACOX1 (Acyl-CoA Oxidase 1) • PTGDS (Prostaglandin D2 Synthase)
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6-gene signature
2years
Construction of a prognostic 6-gene signature for breast cancer based on multi-omics and single-cell data. (PubMed, Front Oncol)
The six genes RS signature established based on multi-omics data exhibited well performance in predicting the prognosis of BC patients, regardless of disease stages or subtypes. Contributing to a more personalized treatment, our signature might benefit the outcome of BC patients.
Journal • Gene Signature • BRCA Biomarker
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BRCA (Breast cancer early onset) • PAK6 (P21 (RAC1) Activated Kinase 6)
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6-gene signature
2years
Immuno-oncologic signature of malignant transformation in oral squamous cell carcinoma. (PubMed, Oral Surg Oral Med Oral Pathol Oral Radiol)
Our work suggests a role for IFN-γ in PD-L1 upregulation in OPMC and presents novel IO transcriptional signatures for frankly invasive OSCC relative to TM.
Journal • PD(L)-1 Biomarker • IO biomarker • Immuno-oncology
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CD8 (cluster of differentiation 8) • IFNG (Interferon, gamma) • LAMC2 (Laminin subunit gamma 2) • CGAS (Cyclic GMP-AMP Synthase) • MMP1 (Matrix metallopeptidase 1) • OASL (2'-5'-Oligoadenylate Synthetase Like) • TDO2 (Tryptophan 2,3-Dioxygenase) • ADAM12 (ADAM Metallopeptidase Domain 12) • CNTFR (Ciliary Neurotrophic Factor Receptor) • COL5A1 (Collagen Type V Alpha 1 Chain)
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PD-L1 expression • IFNG 6-gene signature • 6-gene signature
2years
A Novel pyroptosis-related signature for predicting prognosis and evaluating tumor immune microenvironment in ovarian cancer. (PubMed, J Ovarian Res)
Interestingly, the high-risk group exhibited poor sensitivity towards immunotherapy and better sensitivity towards chemotherapies, including Vinblastine, Docetaxel, and Sorafenib. Briefly, the pyroptosis-related signature was a promising tool to predict prognosis and evaluate immune responses, in order to assist decision-making for OV patients in the realm of precision medicine.
Journal • IO biomarker
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NRAS (Neuroblastoma RAS viral oncogene homolog) • PD-L2 (Programmed Cell Death 1 Ligand 2) • HAVCR2 (Hepatitis A Virus Cellular Receptor 2) • SETBP1 (SET Binding Protein 1)
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6-gene signature
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sorafenib • docetaxel • vinblastine
over2years
Comprehensive analysis of the prognostic and immunological signature of eight Tripartitemotif (TRIM) family molecules in human gliomas. (PubMed, Aging (Albany NY))
In general, the results indicate that TRIM5/17/21/22/24/28/34/47 might exert a crucial influence on gliomas tumorigenesis and might be putative prognostic markers and therapeutic targets for glioma patients.
Journal • Tumor mutational burden
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TMB (Tumor Mutational Burden) • MSI (Microsatellite instability) • TRIM17 (Tripartite Motif Containing 17) • TRIM5 (Tripartite Motif Containing 5)
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6-gene signature
over2years
Identification of a six-gene signature to predict survival and immunotherapy effectiveness of gastric cancer. (PubMed, Front Oncol)
In conclusion, we discovered a 6 gene signature to forecast GC patients' OS. This risk signature proves to be a valuable clinical predictive tool for guiding clinical practice.
Journal • Gene Signature • IO biomarker
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CD8 (cluster of differentiation 8) • CD4 (CD4 Molecule)
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6-gene signature
over2years
Identification and validation of a novel CD8+ T cell-associated prognostic model based on ferroptosis in acute myeloid leukemia. (PubMed, Front Immunol)
Finally, gene mutation analysis, drug sensitive prediction, GSEA and GSVA analysis were conducted between high-risk and low-risk AML patients. Collectively, our findings suggested that the prognostic signature based on CD8+ T cell-related ferroptosis genes can optimize the risk stratification and prognostic prediction of AML patients.
Journal
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IDH1 (Isocitrate dehydrogenase (NADP(+)) 1) • CD8 (cluster of differentiation 8) • HSPB1 (Heat shock 27kDa protein 1) • ATG3 (Autophagy Related 3) • KLHL24 (Kelch Like Family Member 24)
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6-gene signature
over2years
Predicting outcome in dogs with diffuse large B-cell lymphoma with a novel immune landscape signature. (PubMed, Vet Pathol)
In conclusion, the 6-gene-derived risk score represents a robust biomarker in predicting the prognosis in cDLBCL. Moreover, our results suggest that enhanced tumor antigen recognition and cytotoxic activity are crucial in achieving a more effective response to chemo-immunotherapy.
Journal • IO biomarker
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CD8 (cluster of differentiation 8) • BCL6 (B-cell CLL/lymphoma 6) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B)
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6-gene signature
over2years
Prognosis stratification by a mutational signature in metastatic prostate cancer. (ASCO 2023)
These data underline the potential value of using somatic mutations to accurately stratify mPC patients into clinically actionable subgroups.
Metastases
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TP53 (Tumor protein P53) • PTEN (Phosphatase and tensin homolog) • ARID1A (AT-rich interaction domain 1A) • CDK12 (Cyclin dependent kinase 12) • APC (APC Regulator Of WNT Signaling Pathway) • SPOP (Speckle Type BTB/POZ Protein) • FOXA1 (Forkhead Box A1) • NCOR1 (Nuclear Receptor Corepressor 1) • ZFHX3 (Zinc Finger Homeobox 3)
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TP53 mutation • MET mutation • APC mutation • 6-gene signature
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MSK-IMPACT